Caloenas nicobarica (Nicobar pigeon): 135993972
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Entry
135993972 CDS
T11056
Symbol
IRF1
Name
(RefSeq) interferon regulatory factor 1
KO
K09444
interferon regulatory factor 1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
135993972 (IRF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cnic03000
]
135993972 (IRF1)
Transcription factors [BR:
cnic03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
135993972 (IRF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
135993972
NCBI-ProteinID:
XP_065500285
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Position
13:1660638..1667696
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AA seq
314 aa
AA seq
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MPVSRMRMRPWLEMQINSNQIPGLIWINKDKMMFQIPWKHAAKHGWDMEKDACLFRSWAI
HTGRYKVGEKDPDPKTWKANFRCAMNSLPDIEEVKDKSINKGSSAVRVYRMLPPLTKDQK
KERKSRSSREARNRSKRKSYEDTRMEESADRLTTTPLPDDNSGYTPHDYTGQEVEVESTS
LSLDLSSCEVSGSLSDWRAPMETTVADSTNDLYQLQVSPLASSSEDEEEMNSKIFKQLFE
PGQDWHTTSVGGKGFLTNEPGVQSMCSTYSYREQDGEIDTTSGELELRLFDQKSLDFSWL
ETVRPTMQVIPCGL
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgtcgagaatgcgcatgagaccctggctggaaatgcagatcaattctaatcaa
ataccaggactgatatggattaacaaggataagatgatgtttcaaatcccatggaaacat
gcagctaagcatggctgggacatggagaaagatgcctgcctgttccggagctgggccatt
cacacaggaagatataaagtaggtgagaaagaccctgacccgaaaacctggaaggcaaac
ttccgctgcgcgatgaattcactgcctgacatcgaagaagtgaaggataaaagcatcaac
aaaggctccagtgctgtcagggtttacaggatgctgccgcccctgacaaaggatcagaag
aaagaaaggaagtcaaggtcttcaagagaagcaagaaacaggagcaagagaaagtcgtac
gaggacacgaggatggaggagtcagcagacagactaaccacgactcccctgcccgatgac
aacagcggctacacccctcacgactacacagggcaggaagtggaggtggagagcacgtcc
ctctccttagacctctcgtcgtgcgaggtgagcggctccctgagcgactggagggcgccc
atggagaccaccgtggctgacagcaccaacgacctctaccagctccaggtgtctcccctg
gcttcgtcctcagaagatgaagaggaaatgaattcgaagatttttaagcagctgttcgag
ccgggccaggactggcacacgaccagcgtcgggggcaaaggcttcctgaccaacgagccg
ggcgtgcagagcatgtgcagcacctacagctacagggagcaggacggcgagatcgacacc
acgtcaggagagctggagctcaggctctttgaccagaaaagcctcgacttctcctggctg
gagacagtgagacccactatgcaagtcattccctgtggtttgtaa
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