Caloenas nicobarica (Nicobar pigeon): 135994377
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Entry
135994377 CDS
T11056
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
135994377 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cnic01001
]
135994377 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cnic04054
]
135994377 (CIITA)
Enzymes [BR:
cnic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
135994377 (CIITA)
Protein kinases [BR:
cnic01001
]
Serine/threonine kinases: Other
TAF1 family
135994377 (CIITA)
Pattern recognition receptors [BR:
cnic04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
135994377 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
NB-ARC
LRR_8
LRR_14
LRR_9
NPHP3_N
nSTAND3
AAA
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
135994377
NCBI-ProteinID:
XP_065500965
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All DBs
Position
14:14712854..14743673
Genome browser
AA seq
1213 aa
AA seq
DB search
MNLFEEILPRVRKILSAATASDKHALLNLMLKENVISKEYHQALLHEKDREDLARKISLT
FVEKWDLYLTTSVPLCYLNLCGSKPQNVTDNEPTGSNLISDSKGQIMDSALLSENGYLDL
LHSDIDPLHLYTVLDPKSSGNEDDVFSADPEVDASNNDQVNNMDFPYTIENGESGDELYL
CSNTKDAYARIAELAEYVLKDHQEKLIEDAFAGNLIWDEMTAENTEKFTDIKMQKCHKRP
FLGSAESCSEASEPKYKKIVEGPAVPAGNGGFLAMPLNSHPASSTSLTNQYMSFSVPAAD
MLERSFIIPGSSTSLIPECLPASMEGSQEDTDFADPPQQILNFVLESGTSDVILYPVLTS
SMETLVSPSFPVSLCGLEMFKEVRVPITPSEEPLKRPKPVEAFCASLMEYFRDVCKSVAM
EREVALDHLFIDGTLVQSQTETKTGKNSIKATEKELVTCNLQGKENALTRSRIFQIPGGK
DLETKVIVVLGKAGMGKSILAQKICQDWSSGELSQFEFVFWFDCKQISLPEKRYSLKDLL
LEFFVKPQEGSKEIFEYILQNPAKVLLIFDSFEGLHDHENFPRCSASRPEKALCSVKELL
SGLIQKKILNGCTLLLTARPKDKVNQFVSKVDKAIELVGFSPQQRELYITKYFEGLPYCD
NALNLIKEREYLFSHCYSPVMCRFVCFLCETVFETGDKNLPSTLTAVFLKFVQQKIMPMQ
TDVVALQNQGSLAMLARLAWHLGEKHQSALKSDLLPSKEVKEFALKYGFFLPFAFPNHSD
AGEEEFGNTFSDFVIQNFLGALHLMLAEEIKDKSLTKYLSFPSKKKKPYNWLDLVPRFLA
GLLFLQDDPCFCCLSNKDVKQSTKKQKKLLKYIKRLQINELCPERLLELCHCIYETQSSY
LFQHVALRLKPDLSFLGVVLTPPDVHVLHSVLKRSRKEFSLDLRNSSIDIQGLKDLVGLT
NVASFRASLSDTVRLWKSLEQTKDYELLRASTEKFVLDPFKAKTMKDVSDLSDLVEMQEK
MISCVQDVSGCSSYEIPAIKNLRKLEFALGPVCGLQGFLKLVQILAAFPSLQHLDLDALS
ENGIGDEGAKSLSEVFPTLKSLETLNLSQNKITDVGAEKLATALPSLLSLKTLSLYNNSI
CDFGAENLAKVLPAMASLRVLDVQYNKITGVGAQQLTDSLRKCPHIKNLVMWNPTIPYGV
LEHLQQLDSRISV
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaatctctttgaggagatcctgcctagagtaaggaagattctttcagctgctacagct
tctgataagcatgcattgcttaacctcatgctgaaagaaaatgtgatatccaaggagtac
catcaagccttgctccacgaaaaagacagagaggacctcgcgaggaaaatatctctgaca
tttgtggaaaaatgggacctgtacttgaccacttcggttcccctgtgttatttaaacctc
tgtggcagtaagcctcaaaacgtgacagataatgagccaacaggaagcaatttgatttca
gacagcaagggacaaatcatggattcagcacttctgtctgagaatggctatcttgatttg
ctgcacagtgatattgatccattgcatctgtatactgtccttgatcctaagtcatctgga
aatgaagatgatgtcttctctgcagatcctgaagttgatgccagcaataacgatcaggtc
aataatatggatttcccgtatacaatagaaaatggtgaaagtggggatgaattgtatctc
tgttccaacaccaaagacgcttatgcgagaatagctgaattagcagaatatgtgctcaaa
gatcatcaggagaagctgatagaagatgcttttgcagggaaccttatttgggatgaaatg
actgctgaaaacactgagaaatttactgacataaagatgcagaaatgtcataaacgaccc
ttcttaggctctgcagagagttgctctgaagcctcagaacccaaatacaagaaaattgtg
gaaggccctgcagtgcctgcagggaatggcggtttcttagccatgcctctcaacagccat
ccagccagctccacctcactaactaaccagtacatgtccttttctgttcctgctgccgat
atgttggaaagaagtttcataattcctggatcttcaacatctttgattccagagtgtcta
cctgcgagcatggaagggagccaagaggacacagactttgcagatcctcctcagcagata
cttaactttgttcttgaaagtggcacatctgatgttatactatatccagtgctgacttct
tccatggaaacgttggtatccccgagttttccagttagcttatgtggtttggaaatgttc
aaagaagtccgagttcccataactccttctgaagaacctctcaaaagaccaaagccagtg
gaagctttctgtgcatcacttatggaatatttccgagatgtgtgcaaatctgtggccatg
gagcgtgaagtagctcttgatcacctgtttattgatgggacacttgttcagagccaaact
gaaaccaagactgggaagaacagcataaaagcaacggaaaaggagctggtaacttgcaat
ctgcaagggaaggaaaacgctcttacaagaagccgaatatttcagatcccgggaggtaaa
gacttagagactaaagtgattgtggtgctgggaaaagcaggaatgggcaaaagcattctt
gcccagaagatctgccaggactggtccagtggagagctttctcagtttgaatttgtattt
tggtttgactgcaaacaaataagcttgcctgagaagcgatacagcttgaaggatctgctg
cttgaattttttgtaaaaccccaagagggaagcaaagagatctttgagtatatattgcaa
aatcctgctaaagtcctcctgatttttgatagttttgaagggttgcacgatcatgagaat
tttccccgctgctcagccagccggcctgaaaaagccttgtgcagcgtcaaggagctgctt
tcaggactcatccaaaaaaagatcctcaatggttgtactttattacttacagcaaggcca
aaagacaaggtgaaccagtttgtgtccaaagtggataaggctattgaattagtaggattt
tcccctcagcagagggaattgtacataaccaaatactttgaaggattaccctactgtgat
aatgcactgaacttaatcaaggagcgtgagtacctgttcagtcattgttacagccctgtt
atgtgcagatttgtttgttttctatgtgagacagtatttgaaactggagacaaaaacctt
ccttcaactcttactgcagtcttcctgaaatttgtccagcaaaagattatgccaatgcaa
acagatgttgtagccctgcaaaatcaagggagtcttgctatgctagcccgtctagcctgg
caccttggagaaaaacaccaaagtgccttgaaaagtgatcttcttccttctaaggaagta
aaagagtttgctctgaaatatggatttttcctgccatttgcattccccaaccattcagat
gctggagaagaggaatttgggaacacattctctgattttgtcattcagaatttcttgggt
gcgcttcaccttatgttagcagaagagatcaaggataaaagtctaacaaagtacctgtct
tttccatccaagaagaaaaaaccttataactggttagatttagtgcctcgatttttggct
ggattgttgttcctccaggatgacccctgcttctgctgcctttcaaataaagatgtaaaa
cagtcaaccaagaagcagaaaaaactcttgaaatatattaaaaggctacagataaatgag
ctctgtccagagaggttacttgagctttgccattgtatttatgaaacacaaagcagttac
ctttttcagcatgtggccttaaggctcaagccagacctgtcttttctgggcgtagttctt
actccacctgatgtccacgtactgcactctgttttaaaaaggtcaagaaaagagttttcc
ttggatttgcgaaacagcagcattgacatacaagggctgaaagacttggtcggcctaacg
aacgtggcatcgttcagggcctccctcagtgataccgtcaggctctggaagtctttagaa
cagacaaaagactacgaactgctgagagcatcaacagagaagtttgttcttgatcccttt
aaggcaaagacaatgaaggacgtcagtgacctttcagacctggtagagatgcaggagaag
atgatcagttgtgtgcaagatgtatctggttgcagcagctatgaaattcctgccatcaaa
aacctcagaaaactagaatttgcgttgggtccagtatgtggcctacagggattcctaaaa
ctcgtgcaaattcttgcagcatttccatcacttcagcatttagaccttgatgctctgagt
gaaaatggcataggagatgaaggagcaaagagtctatctgaagtctttccaaccctgaaa
tcactggaaacattaaacttatcgcagaataagataacagatgtgggtgcggagaaacta
gctacagctcttccttccttgttgtcattgaagacactaagcttgtacaataatagcatt
tgtgattttggagcagaaaatcttgcgaaagttcttcctgcgatggcatctctaagagtg
ctagatgttcagtataacaaaatcactggtgttggagcccagcagctgactgacagcctg
cgcaaatgtccccacataaagaacttggtgatgtggaatcccaccattccctacggagtt
ctcgaacacctgcagcagctggactctaggatcagtgtgtag
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