Caloenas nicobarica (Nicobar pigeon): 135994516
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Entry
135994516 CDS
T11056
Symbol
TOP3A
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03440
Homologous recombination
cnic03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
135994516 (TOP3A)
03460 Fanconi anemia pathway
135994516 (TOP3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnic03032
]
135994516 (TOP3A)
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135994516 (TOP3A)
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
135994516 (TOP3A)
DNA replication proteins [BR:
cnic03032
]
Eukaryotic type
DNA Topoisomerases
135994516 (TOP3A)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
135994516 (TOP3A)
FA (Fanconi anemia) pathway
135994516 (TOP3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Zn_ribbon_Top1
Toprim
Zn_ribbon_GRF_2
zf-C2H2_10
Lar_restr_allev
Motif
Other DBs
NCBI-GeneID:
135994516
NCBI-ProteinID:
XP_065501160
LinkDB
All DBs
Position
14:2706331..2717829
Genome browser
AA seq
991 aa
AA seq
DB search
MNISARLSATRGVRMLPQRLFSRAAEDMALQRIRKREGFSKFNKIYEYDYQMFGQNVTMV
MTSVSGHLLAHDFKLPFRKWHSCNPLALFDAEIEKYCPENYLDIKRTLEREVQQCQALVI
WTDCDREGENIGFEIIHVCKAVKPNLRVFRARFSEITLHAVRTACENLTQPDQKTSDAVD
VRQELDLRIGAAFTRFQTLRLRKIFPDILADQLISYGSCQFPTLGFVVERFKAIQAFVPE
AFYKIKVTHDHEDGSVVFNWKRNRLFNHTACLVLYQMCVEDPVATVVEVGSKPKSKWRPL
PLDTVELEKLASRKLKINAKETMRIAEKLYTQGFISYPRTETNIFPKELNLSALVQQQTQ
DPNWGAFAQRILDQGGPTPRCGTKSDQAHPPIHPTKYTANLQGSEQRLYEFIVRHFLACC
SEDAKGQETTVEIDIANERFIAQGLMILARNYLEVYPYEKWSDKVIPLYQKGSHFQPTTV
EMVDGETSPPLLLTEADLIALMEKHGIGTDATHAEHIETIKTRMYVGLTADQRFLPGHLG
MGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKSVVLQQQVQKYKQVFIEAVARAN
KLDQALAQYFGEAAEIAEQEEVYPAMPLSVRKCPQCNNDMVLKTRKNGGFYLSCMGYPAC
KTAVWFPDFVLDVARDESVCAVCKPHPVHRLKFKFKRGSVPPVMPLEFVGCIGGCDEMLK
ELLDLKYLHRSSQPTSAFSQQAYRLQVSNSSRGDSDNQHTRRTTNLAAGHLLSLSSTRMP
RPAPSATPDDGNNAVVCNCGNEALLLTVRKEGPNQGRQFYKCSASTCNFFLWADQHSQDR
SEAAPRGSALPQPFAGRGPAEFQRPGGGRGLGLFGSNSSDSRGGAVCKCDQPAVTRTVQK
DGPNKGRQFHTCSKPREQQCGFFQWADENMAPGPSGDVSLNDFGSSGYSRELGSKAKRPS
GLSSGATAKKPRTCSVCHQPGHTRKTCPQNH
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgaacatctcggcgagactttcggccacccgcggggtcaggatgctgccccagcgcctc
ttctcccgggccgcggaggacatggcgttgcagaggatccggaagcgagaggggttttcc
aagttcaacaagatctacgaatatgactaccagatgtttggccagaatgtgactatggtg
atgacatccgtgtcaggacacttactggctcatgattttaagctgccgtttcgcaaatgg
catagctgcaaccctctggctctttttgatgctgaaatcgagaagtattgccctgaaaat
tacttggatatcaagagaaccctggaacgagaagtccagcagtgccaagctctggtgatc
tggaccgactgcgatcgagagggagagaacatcggctttgagatcattcacgtttgcaaa
gctgtaaagccaaacctccgggttttccgagcccgtttctcagagatcacgcttcacgct
gtcagaacagcctgcgagaacctcacccaaccagatcaaaagacaagtgatgctgttgat
gtccgtcaggagctggacctcaggatcggtgctgccttcaccagattccagacactgcgt
ctccggaagatcttccctgatattttagcagatcagctgatcagctacggcagctgccag
ttcccaacgctggggtttgtagtcgaacgctttaaagccatccaggcctttgttcctgaa
gccttctataaaataaaagtgacacatgatcatgaagacggcagcgtcgtcttcaactgg
aagaggaaccggctctttaatcacacagcgtgcctggtcctttaccagatgtgtgtggag
gatccagtagcgactgttgttgaggttgggagcaagccaaagagcaaatggaggcccctg
cccctggacactgtggaacttgagaagttggcttcccgcaaactgaaaataaatgcgaaa
gaaaccatgagaatagcagaaaaactctacactcaagggttcattagctacccccgaact
gagaccaacattttccccaaggagctgaacctctcggctttagtgcaacagcagacgcag
gacccaaactggggagcatttgcacagaggattttggatcagggtgggccaacccctcga
tgcggaaccaaatcagaccaggctcaccctcccattcaccccacaaaatacactgcgaac
ctccagggcagcgagcagagactctacgaattcattgtgcgccattttttggcttgctgc
tctgaggatgccaagggacaggaaacaaccgtggaaatcgacatcgctaatgagcgattc
attgctcaaggactaatgatcctggcccgaaattatctggaagtctatccctacgagaag
tggagcgataaggttatcccactgtatcagaaagggtctcactttcagcccactacggtg
gagatggtggatggggaaaccagccctccattgctcctcacggaagcggatctgattgct
ctcatggagaaacatggcattgggactgatgccactcacgctgagcacatcgagacaatt
aagacgcggatgtacgtgggccttacagcagatcaacggttcctgccaggccacctgggc
atggggctggttgaaggctatgattccatgggctacgagatgtccaagcctgaccttcga
gctgagctggaggctgatctgaaactcatctgtgaagggaagaaagacaaatcagtggtg
ttgcagcagcaggtccaaaagtacaagcaagtcttcatcgaagctgtggccagagccaac
aagttggaccaagccctggctcagtattttggagaagccgccgaaattgcagagcaagag
gaggtctacccggcaatgcccctttccgttcggaagtgtccacagtgcaacaatgacatg
gtcctgaagaccaggaagaacggcgggttctatctcagctgcatgggctacccagcatgt
aaaactgcggtctggtttcccgattttgtgctggatgtggccagggatgagagcgtctgt
gctgtgtgtaaaccgcatccagttcacaggctgaagtttaaattcaagagaggcagcgtt
ccaccagtgatgcccctagagtttgttggttgcattgggggctgcgatgagatgctaaaa
gagctcttggacctgaagtatttacacaggtcatcccaacccacatcagcattcagccag
caagcgtaccgcttgcaggtcagcaactccagcagaggtgacagtgacaaccagcacaca
aggaggaccacaaacctggcagcaggacatctgctctccttgagctccacgagaatgccc
agacctgctccttcagccactccagacgatgggaacaacgctgtggtgtgcaactgtggg
aacgaagccctgctcctgaccgtgcgcaaggaagggcccaaccaaggccggcagttttac
aaatgcagtgccagcacctgcaacttttttctctgggctgatcagcactcgcaggacaga
agcgaggcggctccgcggggctccgcgctgccccagccctttgcgggaaggggcccggca
gaattccagcgcccaggaggagggagaggcctagggctctttggaagcaacagctcagat
tcgagaggtggcgcagtttgcaagtgcgaccagccagccgtcacacgcactgtccaaaag
gacgggcccaacaaggggcggcagttccacacctgctccaaaccccgagagcagcagtgc
ggcttcttccagtgggcagacgaaaacatggcaccagggccgtctggagacgtctctttg
aacgactttggcagcagtgggtactccagagagttgggaagtaaagccaagagaccgagt
ggtctctcctcaggagccactgccaagaaaccacggacctgtagcgtttgtcaccagccc
ggccacacgaggaaaacctgtccccaaaaccactga
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