Caloenas nicobarica (Nicobar pigeon): 135994724
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Entry
135994724 CDS
T11056
Symbol
TAF4
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135994724 (TAF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnic03021
]
135994724 (TAF4)
03036 Chromosome and associated proteins [BR:
cnic03036
]
135994724 (TAF4)
Transcription machinery [BR:
cnic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
135994724 (TAF4)
Coactivators
SAGA/TFTC/STAGA complex
135994724 (TAF4)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
135994724 (TAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
135994724
NCBI-ProteinID:
XP_065501599
LinkDB
All DBs
Position
15:11613887..11650641
Genome browser
AA seq
1100 aa
AA seq
DB search
MAAGSDLLDEVFLNTEVDEKVVSDLVGSLESQLAASGHHHQHHKAQEPLRAAGGLLGNHV
VSSGSSSSSPSPSPGGGVVGGNANAQTESSNSSKMGLSAPEITKAGAGGVQGGVINHNTR
SQTSALDGATTTSTSTTTAAAGGSEVTAAPGTLSQGKSVVISTMATALSTRNGKIGTTTV
QTLNGSNVVMNSHHTGGAAFSGTPVTASAPAVAPLVNNGPGSVGKGNTVNAVLPSASNTV
IQTSFLNTAASSATSSSPTVISSQPLPSIGTGAPTVTLVRPPIHTAGPTVAAAGAATQNG
SNTVINSTISVGSFPAVATATVGSGVSLQTSLVNSQSGSAVPAAPTTQVIKSESPKTIVQ
AVSQQQTLATGGQPSTTGGNMIIGQTMQAGLSNVAPNPGGIPPAAPGTPTGMAKGAANTV
AQSLPRTPTATTSGIRATLTPTVLAPRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLVI
PQQALAQMQAQAHAQSQPQNTLTPRPATPTSAPPVQISTVQAPGTPIIARQVTPTTIIKQ
VSQAQTTVQPTTTLQRPPVVQPQIVLGGTAQTTTLGTATAVQTGTPQRTVQGTTATSTAA
TETMENVKKCKNFLSTLIKLASSGKQSSETAANVKELVQNLLDGKIEAEDFTSRLYRELN
SSPQPYLVPFLKRSLPALRQLTPDSAAFIQQSQQQQPTTTQAAIATIPSAAVLLSSSVQR
TAGKATATVTSTLQQPVISLTQPTQVGVSKQGQSTPLVIQQPQKAGALIRPPQVTLTQTP
MVALRQPHSRIMLTTPQIQLNQLQTVPVVKPAVLPGNKAIATVSTQVAAAQKNKLKEPGG
GSFRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDETFLFPAPLQRRILEI
GKKHGITEIHPDVVSYVSHATQQRLQNLVEKLSETAQQKNISYKDDERYEQASDVRAQLK
FFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDAN
LTALAAIGPRKKRKVDSPGSGSGTEGSGSSAAVPGSSGVGTTRQFTRQRITRVNLRDLIF
CLENERETSHSLLLYKAFLK
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctcggatctgctggatgaggttttcctgaacacggaggtggatgagaag
gtggtgagcgacctggtgggatccctggagtcccagctggcggcctccggccaccaccac
cagcaccacaaggcgcaggagcccctgagggccgctggggggctgctggggaaccatgtt
gtgagcagcggcagtagcagcagcagccctagcccaagccctggaggaggagtagtagga
ggcaatgctaatgcccaaacagagagcagcaacagcagcaagatgggactgagtgcccca
gagatcacaaaagcaggagcaggaggagtgcaagggggtgttattaatcataacaccagg
tcccagacttcagctctggatggagccaccacaacgagcaccagcaccaccactgcagca
gcaggaggatctgaagtcactgctgctccagggaccctcagtcagggcaaatcggtggtt
atcagcaccatggcaactgccttgtccaccaggaatggcaagattgggaccacgacagtg
caaactttgaatgggagtaatgtggtgatgaactctcaccatacaggaggtgctgctttc
tctgggactcctgtgactgcttctgcacctgctgttgcccctcttgttaacaatggacct
ggatctgtggggaaaggaaatactgttaatgctgttttgccgtcagcttcaaacactgtc
atccagacttctttccttaatactgctgcgtcctctgcaacttcctcctcacccacagtt
atctcctcacagccactgccgagcatcggaaccggggcgcctacggtaacgcttgtgagg
ccaccgattcacacagcaggacccacagtagctgcagctggtgcggccactcaaaatggg
agcaatactgtgatcaattcaaccatcagtgtggggagttttcctgctgttgctacagcc
actgtgggatctggagtttccctccagacgtcgcttgtgaacagccagtctggttccgct
gtgccagcagctcccaccacacaggtcatcaaatctgagtctcctaaaactatagtccag
gcagtatcccagcagcagacgctggctactggtggccagcccagtactacagggggtaac
atgattattgggcaaactatgcaagctggtctctccaatgttgctcccaatcctggtggg
atacctcctgcggctcctggcacccccacgggaatggctaaaggcgctgccaatacggtg
gcacaaagtctgccaaggactccaacagcaactacaagtggaatcagagcaactttgact
cctacagttttagcacctcgtttgcctcagccgcctcagaatccaactaacattcagaat
tttcagttaccaccaggcatggtcctggtgcgcagtgagaacgggcaactgctggtgatc
ccccagcaggccctggcgcagatgcaggcgcaggcacatgcccagtcccagccgcaaaac
actctgactcctcgtcctgctacacccaccagtgcccctccggtgcagatatccacagtg
caggctccaggaacgcccattattgcacgacaggtgacaccaactactattatcaagcaa
gtgtctcaggctcaaacaacagtgcaacccacaacaacgctacagcgtcctcctgttgtg
caacctcagattgttctgggtggtactgcacaaacaactacattggggacagcaacagcc
gtacaaactggaactcctcagaggacagtgcaaggaacaacggcgacctccaccgctgcc
acagaaactatggaaaatgtgaagaaatgcaaaaactttctgtccacattaataaaactg
gcatcatctggaaaacagtcttcagagacagcggcgaacgtgaaagaattggtacagaac
ctactggatggaaaaattgaagcagaagactttaccagtaggctgtacagagaactgaat
tcttcacctcaaccttaccttgtgcctttcctgaagaggagtttacccgccttgagacag
ttaacaccagactctgcagctttcattcaacaaagtcaacagcagcagccgacgacgacg
caagcggcgatagcgacgatcccgtctgcggccgtgctcctgagctcctcggttcagcgc
acagcggggaaggcgactgcaaccgtaacgagtaccctccaacaacctgtcatcagcctc
actcagcccacacaagttggtgttagtaaacaagggcagtcaacgccgctggttatccaa
cagcctcagaaagcaggggcgttgataaggcctccacaggtgacgttgacacagacacca
atggtagcgttgcggcaaccacacagtcgtatcatgctcactactcctcaaattcaactg
aatcaacttcagacagtacctgtggtaaaaccagccgtattacctggaaacaaagctatc
gccaccgtttcgacacaagtagctgctgctcagaagaataaactgaaagaacctggggga
ggctcttttagggatgatgatgacattaatgatgttgcatcaatggctggagtcaacctg
tcagaagaaagtgctcggatattggcaacaaactcagagctagtgggcacattaacgagg
tcctgtaaagatgaaacgttccttttcccagcacctttacaaaggaggatattagaaata
ggtaaaaaacatggaataacagaaatccatcctgatgtagttagctatgtatcgcatgct
acacaacaaagactacaaaacctcgtggaaaaattatcagagactgctcaacaaaagaac
atttcttacaaggatgatgaaagatacgaacaagcaagtgatgttcgggcacagctcaag
ttctttgaacaacttgatcaaatagaaaagcagcgtaaagatgaacaagaaagggaaatt
ttaatgcgtgcagcaaagtctcgatctcgacaagaagatccagagcagcttaggttgaaa
cagaaggcgaaggagatgcagcaacaagagctagcgcagatgagacagagggatgccaac
ctgactgcattagctgccatcggtcccagaaagaaaaggaaagtagattcaccgggatct
ggatcggggacagagggatctggttcgagcgcagcagtcccgggcagctctggagtcgga
acaaccagacagtttacgcgacaaaggataacgcgggtgaacctcagggacctcatattt
tgtttagaaaatgagcgagagacaagccattcattattgctatataaagcattccttaag
taa
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