Caloenas nicobarica (Nicobar pigeon): 135994820
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Entry
135994820 CDS
T11056
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03015
mRNA surveillance pathway
cnic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135994820 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
135994820 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135994820 (PABPC1L)
03041 Spliceosome [BR:
cnic03041
]
135994820 (PABPC1L)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135994820 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
135994820 (PABPC1L)
Spliceosome [BR:
cnic03041
]
Complex C
Other components
Complex C specific factors
135994820 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_RdRP1_2
RRM_3
ATP-grasp_2
DUF6262
Motif
Other DBs
NCBI-GeneID:
135994820
NCBI-ProteinID:
XP_065501776
LinkDB
All DBs
Position
15:complement(7650187..7662065)
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AA seq
635 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGAKAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQPPPGYFLPPIPQPQTRATF
YSPSPVVPVRPATRWSAQPSRPPPTYPAATPILRAAVPPRRLLTNISTMRQASTQVPRVP
PQAQRVANIGTQTVSARVPSSPTLPRGTPQYKYSSSVRNVQPMGHMPPMVAPQVGEPAVH
VQGQEPLTASMLAAAPPQEQKQMIGERLYPLIHAMHPSLAGKITGMLLEIDNSELLLLLE
SPDSLRSKMEEAVAVLQAHQVTKTSHKNSSVAFLQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggccctggctacccattagcctctctctatgtgggggacctccacccg
gacgtgactgaagccatgctctatgagaagttctcgcctgctgggcccatcatgtccatc
cgagtctgccgggacgttgccacacgccgatctctgggctatgcctacattaacttccag
cagcctgtggatgctgagcgagccctggacaccatgaactttgaagtgatcaaaggccgt
cccatccgcatcatgtggtcccagcgggaccccgggctccgaaagtcaggggtgggaaac
gtctttatcaagaacctggatgactccattgataacaaagccctgtatgacacattctct
gccttcggaaacatcctgtcgtgcaaggtggtttgtgatgaaaatggatcccgtggctat
ggctttgttcactttgagactcacgaggcagcgactcgggccatcgagaccatgaatggg
atgttgctcaatgaccggaaggtgtttgttggtcacttcaaatcccgcaaagagcgcgag
gcagagtttggggcgaaggcgatggagttcaccaacgtctacatcaaaaactttggggat
gacatggatgacgacagactgcgggaaatcttctccaagtttggaaaaactctaagtgtc
aaagtcatgatggacagcactggccgctcaaaaggctttggattcgtcaactttgagaag
cacgaagaagcccagaaggcggtggccgacatgaacgggaaggagatcaacgggcggatg
gtgtatgtgggccgggcccagaagcggctggagcgccagagcgagctgaagaggaaattt
gagcagatcaagcaggagcgagtgagcaggtaccagggggtcaacctgtatgtgaagaac
ttggatgatgggatagatgatgagaggctgaggaaggagttctctccctacggcaccatc
accagcgccaaggtgatgacagagggtggccacagcaaagggtttgggtttgtatgtttt
tcctccccagaagaggctaccaaggccgtgactgaaatgaacgggcggatcgtcagcacc
aagcctctctacgtcgcgctcgctcaaaggaaagaggagcggaaagcaatcctcaccaac
cagtacatgcagagattagctaccatgagggctctgcctggccctctcctgggctccttc
cagcccccaccggggtactttctaccccccatcccccagccacaaaccagagctaccttc
tacagccccagcccagttgtcccagtccgtcctgccactcgctggagtgcgcagccctcc
cggcctcccccaacgtatcctgcagctacccccatcctgagggctgccgtgccgccccgg
cgcctgctcaccaacatcagcaccatgagacaggcctccacgcaagtgccccgcgtgccc
ccccaggcccagagagtggccaacatcgggacacagacggtcagcgcccgggtgccctcc
tcgcccaccctgccgcggggcaccccgcagtacaagtactcctcgtccgtcaggaacgtc
cagccgatggggcacatgccacccatggtggccccgcaggtgggagaacctgctgtgcat
gtgcaggggcaggagccgctgacagcatccatgcttgcagcagcccctcctcaggagcag
aagcaaatgataggtgagcgcctctaccctctgatccacgcgatgcatccctcgctggcc
ggcaagatcactgggatgctgctggagattgacaactcggagctgctcctgctcctggag
tcccccgactccctgcgctccaagatggaggaggcggtggctgttctccaagcacaccag
gtcaccaagacgtcgcacaagaacagctccgtggcgttcctgcagtga
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