Caloenas nicobarica (Nicobar pigeon): 135994826
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Entry
135994826 CDS
T11056
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6 isoform X1
KO
K12855
pre-mRNA-processing factor 6
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135994826 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnic03041
]
135994826 (PRPF6)
Spliceosome [BR:
cnic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135994826 (PRPF6)
Complex C
U5 SnRNP specific factors
135994826 (PRPF6)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
HAT_Syf1_CNRKL1_N
TPR_17
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
Suf
TPR_2
TPR_8
ARM_TT21_2nd
FAT
TPR_1
TPR_CcmH_CycH
T7SS_EccA1_N
ARM_TT21_C
TPR_21
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
135994826
NCBI-ProteinID:
XP_065501787
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All DBs
Position
15:9671850..9695014
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AA seq
889 aa
AA seq
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MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTTVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARREQWIQDAEECDKAGSVATCQAIMRAVIGI
GIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRES
LEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLE
SENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLW
MMKGQIEEQKELVEEAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLK
NPKNPDLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVD
ALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEE
QQEEVRKRCENAEPRHGELWCDVSKDIQNWQKKIGEILVLVAAKLKNTF
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctgggcatgcccgcgcccctgggctacgtgccgggg
ctgggccgcggcgccacgggtttcaccacccgctcggacatcggtcccgcccgagatgcc
aacgaccctgtggacgatcgacacgcgccgccggggaagaggacggtcggagatcaaatg
aaaaagaaccagacggctgatgatgatgacgaagacttgaacgacaccaattacgatgag
ttcaatggttatgctgggagcctgttctcaagtggtccctatgaaaaagatgatgaggaa
gcagatgctatatatgcagcgttggataagaggatggatgaacgcaggaaagaaagaagg
gaacaacgagaaaaagaggaaattgaaaaataccgtatggaacggcccaaaattcagcag
cagttctcagacttgaaacggaagctggcagaggtgacagaggaggagtggctgagcatt
ccggaggtcggggatgccaggaacaagcgtcagaggaatcctcggtacgagaagctgact
cctgtccccgacagcttctttgcgaagcatttgcagtcgggggagaatcacaccacggtg
gacccgcgccagacgcaatttggtggattgaataccccgtatccaggcggcttgaatact
ccgtacccaggagggatgacgccaggcttgatgacacctgggacaggtgaattggatatg
aggaagattggccaagccaggaacaccttgatggacatgaggctgagccaggtgtcggac
tctgtgagcggccagactgtagtggacccgaaaggatatttgacagacttgaattcgatg
attcccacacacggaggagatatcaatgatatcaagaaagcccgtttgctcctgaagtct
gtacgagagaccaatcctcatcatccgccagcctggattgcatctgcccggctggaggaa
gtcactggcaaactccaagtggctcgaaacctcatcatgaaaggaacagagatgtgcccc
aagagtgaagatgtttggttagaagctgctcggcttcagcctggggacacagccaaggct
gttgtggcccaagctgttcggcaccttccacagtctgtccggatttatataagagcagcg
gagctggagacagatatccgtgcgaagaaacgtgtccttaggaaagcccttgagcatgtt
ccaaattcggtgcgtttgtggaaagcagctgtggagttagaagaacctgaggatgccagg
atcatgctgagtcgggctgtggagtgctgtcccactagcgtggaactgtggcttgcgttg
gcaagactggagacatatgagaatgctcgtagagagcaatggatacaggatgctgaggaa
tgtgataaagctggaagcgtggccacgtgccaggcaatcatgcgagcggtgattgggatc
gggattgaggaagaggatcggaaacacacctggatggaagatgcagacagttgtgttgct
cacaatgccctggagtgtgcccgagcaatttacgcttatgccttgcaagttttcccgagc
aagaagagcgtgtggctgcgagcagcgtactttgaaaagaaccatggaacgagagaatcc
ttagaggctcttttgcagagagcggttgctcactgtcccaaagcagaagtgctgtggctc
atgggggccaagtccaagtggctggcgggagatgtgccggccgcccggagcattttggcc
ttggcgttccaggccaaccccaacagcgaggagatctggctggctgccgtcaagctcgag
tcggaaaacaatgaatacgaaagagcgaggaggctgctggccaaagctcgcagcagcgct
cccactgcacgggtcttcatgaagtctgtgaagttagaatgggtgctcgggaacatcgct
gcggcccaggagctttgtgaggaagccctgaagcactatgaggacttccccaagctctgg
atgatgaaaggacaaatagaggaacaaaaagagctggtagaggaagcccgggaggcttat
aatcaagggttgaaaaagtgcccccattccatacccctgtggcttttgctgtccaggctg
gaggagaaggttgggcagctgaccagagcaagagccatcttggaaaagtctcgcctgaag
aatccgaagaatccagatctctggttggagtctgtgcgattggagtacagagctgggcta
aagaacattgcaaatactctgatggccaaggcattgcaagaatgccccaattcaggaatc
ctgtggtcagaggcgattttccttgaagcgcgaccgcaacgaaagaccaagagtgtggat
gctctcaagaagtgtgaacatgacccacatgtcctgctagctgtggccaagctgttctgg
agcgagcgtaaaataaccaaggcccgagaatggttccaccgaacagtgaagatagactcg
gacctgggggatgcctgggctttcttttacaaatttgagctccagcacggcacggaggaa
caacaagaagaggtgaggaagcgctgtgagaacgctgaaccccgccacggagagctctgg
tgtgatgtctccaaggacatacagaattggcagaaaaagatcggagagatcctcgtgctt
gtggcagccaagcttaaaaataccttctag
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