Caloenas nicobarica (Nicobar pigeon): 135995088
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Entry
135995088 CDS
T11056
Symbol
HNF1A
Name
(RefSeq) hepatocyte nuclear factor 1-alpha isoform X1
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cnic03000
]
135995088 (HNF1A)
Transcription factors [BR:
cnic03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
135995088 (HNF1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
Homeobox_KN
KPBB_C
Motif
Other DBs
NCBI-GeneID:
135995088
NCBI-ProteinID:
XP_065502181
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All DBs
Position
16:complement(10380906..10395860)
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AA seq
631 aa
AA seq
DB search
MVSKLSHLQVELLGALLESGLTKETLIKALSEAEPYVLQSESQRAINALQTEKGEPCPDI
PNGMGESRLSEDETSDDGEEFTPPIMKELENLSPEEAAHQKAVVERLLQEDPWRVAKMVK
SYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREVAQQFTHA
GQGILTEEPMGDDLPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEEREALVEECNRAE
CIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHKLAMDTFSGPQPTSAPPLTPH
NSSSLQPTSALSPSKVHGVRYNQQPASEAESSSSNHHGNSSMVTTQTILHQVSPPGLEPS
QNLLSTDTKLVSAPGGTLPPVSTLTALHSLEQNPHTLSQQTQNLIMASLPGVMAIGAGET
SSLAPAFTNTGASTLVIGLASTQPQSVPVINSMGSSLTTLQPVQFSQQLHPSYQQPLMQQ
VQSHINQSPFMATMAQIQNPHALYGPKSEVAQYTHTGLLPQTMVITDTANLSALTNLTPT
KQAFTSDSETHTESGMHTPVSQAPTIHLQNQDTTIQHLQPGPRLTSSPAVSSSSLVLYQS
SDSTNSHSQLLPSTHNAMETFISTQMASSTQ
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggtctcgaagctgagtcatcttcaagtggagctgctgggagcgctgctggagtcggga
ctgaccaaggagaccctgatcaaggcgctgagcgaagcggaaccctacgtgctccagagt
gaaagtcagcgcgctatcaacgcgctccagacggagaaaggggaaccctgtcccgacatc
cccaacggaatgggggagtccaggctatcggaagatgaaacctctgatgacggggaggaa
tttacccctccaataatgaaggagctggaaaacttgagccctgaggaggctgctcaccag
aaggctgtggtggaaagactattacaagaggatccctggcgagtagcaaagatggtgaaa
tcctacctccagcagcacaacatcccccagcgtgaggtggtggacactactggtctgaac
caatcgcacctctcgcaacacctcaacaagggcactcccatgaagacccaaaaaagggca
gccctctacacctggtatgtccgcaagcagcgagaggtggcccagcaattcacacacgct
ggccagggtattctgacagaggagcccatgggagatgacctgcccaccaagaagggaaga
agaaaccgctttaagtggggtcctgcctcccaacagatcctgttccaagcctatgagaga
cagaaaaaccccagcaaagaagagagagaggcactggtggaagagtgcaacagagcggag
tgtattcagagaggtgtctccccatctcaggcccagggcctgggctcgaacctggtgaca
gaggtcagagtttacaactggtttgccaatcgcaggaaggaggaggctttccggcacaag
ctggccatggacaccttcagcggaccacagcccacctctgctcccccgctaactcctcac
aactcttcctccctccagccaacatctgctctctcacccagcaaagttcacggagtgagg
tacaaccagcagccagccagcgaggcagagtcctccagcagcaaccaccacgggaacagc
tccatggtgaccacccagaccatcctgcaccaggtttctccccctggactggagcccagc
cagaacctcctgagcacagacactaagctggtctcggctcccggaggaactctccctcct
gtcagcaccctgaccgccctgcacagcctcgagcaaaacccccacacactgagccagcaa
actcagaacctcatcatggcatccctgccaggcgtcatggccatcggagcgggcgagacc
tcgtccctagcaccagcgttcaccaacactggtgcctccaccctggtgatcggcctggcc
tcaacccagccccagagcgtccccgtcataaacagcatggggagcagcctcaccaccctg
cagcccgtccagttctcccagcaactgcacccgtcttaccagcagcccctcatgcagcag
gtccagagccacatcaaccagagccccttcatggctaccatggctcaaatacagaaccct
cacgctctctatggccccaagtccgaagtggcccaatacacacatacaggcctcttgcca
caaaccatggtgataacagacacagccaacctcagcgccctgactaacctgacaccaact
aaacaggcattcacatctgactcagagactcacacggagtctgggatgcatacgccagtg
tcacaggcaccaacaatacacttacagaaccaagacacaaccatccagcaccttcagcca
ggtcctcgcctcacgtcaagccctgctgtgtcctccagcagcctggtgctgtaccaaagc
tctgactccaccaacagccacagccagctgctgccatccactcacaacgccatggagacc
ttcatctccacacagatggcatcctccacccagtaa
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