Caloenas nicobarica (Nicobar pigeon): 135995264
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Entry
135995264 CDS
T11056
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03030
DNA replication
cnic03410
Base excision repair
cnic03420
Nucleotide excision repair
cnic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135995264 (RFC5)
03410 Base excision repair
135995264 (RFC5)
03420 Nucleotide excision repair
135995264 (RFC5)
03430 Mismatch repair
135995264 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cnic03032
]
135995264 (RFC5)
03036 Chromosome and associated proteins [BR:
cnic03036
]
135995264 (RFC5)
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135995264 (RFC5)
DNA replication proteins [BR:
cnic03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
135995264 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
135995264 (RFC5)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
135995264 (RFC5)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
135995264 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
135995264 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_16
AAA_24
AAA_22
AAA_11
AAA_assoc_2
DEAD
AAA_14
RuvB_N
ResIII
DUF815
AAA_5
AAA_30
AAA_19
PhoH
DNAX_ATPase_lid
AAA_7
TniB
ATPase_2
nSTAND3
TIP49
Thioredoxin_6
AAA_25
Mg_chelatase
Hydantoinase_B
bpMoxR
Gp44_lid
NPHP3_N
AAA_28
Motif
Other DBs
NCBI-GeneID:
135995264
NCBI-ProteinID:
XP_065502516
LinkDB
All DBs
Position
16:12948824..12952169
Genome browser
AA seq
329 aa
AA seq
DB search
MARAGGGNLPWVEKYRPQALSELVSHQDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTTMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRKITELKTLKGLALQDILTEIHLFMHRVDFPPSIRIQLLIKLADIEYR
LAAGTSEKIQLSSLIAAFQVTRDLIVAEA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgagccggtggcgggaacctgccgtgggtggagaagtaccggccgcaggcgctg
tcggagctggtgtcgcaccaggatattctcagcaccgtgcagcggttcatcagcgaggat
cggctgccgcatctcctcctctatggcccccccggtaccgggaagacctcgaccatcctc
gcctgcgccaggcagctctaccgggagcgggagttcggctccatggtgctggagctcaac
gcctctgatgaccggggtatcgacatcgtccgagggcccatcctgagcttcgccagcacc
aggaccatctttaagaaaggcttcaagctcgtcatcctggatgaagctgacgccatgacc
caggatgctcagaacgccctgaggcgagtgatcgagaagttcacagaaaacacccgcttt
tgcctcatctgcaactacctctccaagatcatcccggccctgcagtcccgctgcacgcgc
ttccgattcggccccctcaccccggagctgatggtgccccggctgcagcatgtcattcag
gaggagggggtggacgtgaccgaggatggaatgaaggctctggtgaccctctcaagcggt
gacatgcgcagagccctcaatatcttgcagagcaccaccatggccttcgggaaggtgaca
gaggagaacgtctacacctgcacgggacaccccctcaagtccgacatcgccaacatcctc
gactggatgctgaaccaggacttttccaccgcctaccgcaaaatcacagagctgaagacg
ctgaagggcttggccctgcaggacatcctcaccgagatccacctcttcatgcacagggtt
gatttcccgccctcgatccgcatccagctgctgatcaaactggcggacatcgagtaccgg
ctggctgcggggaccagcgaaaagattcagctgagctccctcatcgcggctttccaagtc
accagggacctgatcgtggccgaagcctga
DBGET
integrated database retrieval system
