Caloenas nicobarica (Nicobar pigeon): 135995323
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Entry
135995323 CDS
T11056
Symbol
CLTCL1
Name
(RefSeq) clathrin heavy chain 2 isoform X1
KO
K04646
clathrin heavy chain
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04142
Lysosome
cnic04144
Endocytosis
cnic05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
135995323 (CLTCL1)
04142 Lysosome
135995323 (CLTCL1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
135995323 (CLTCL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnic04131
]
135995323 (CLTCL1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cnic04147
]
135995323 (CLTCL1)
Membrane trafficking [BR:
cnic04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
135995323 (CLTCL1)
Exosome [BR:
cnic04147
]
Exosomal proteins
Proteins found in most exosomes
135995323 (CLTCL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Gp18_dom_I
Motif
Other DBs
NCBI-GeneID:
135995323
NCBI-ProteinID:
XP_065502633
LinkDB
All DBs
Position
16:8962858..8998683
Genome browser
AA seq
1679 aa
AA seq
DB search
MAQILPIRFQEHFQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMSDPTT
PIRRPISAESAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMAEEVIFWKWISVNTVA
LVTETAVYHWSMEGESQPQKMFDRHASLAGCQIINYRTDEHQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFAEFKIEGNAKPSTLFCFAVRSPAGGKLHIIEVGQPATGN
QPFVKKAVDVFFPPEAQTDFPVAMQIGVKHGVIYLITKYGYIHMYDLESGVCIYMNRISA
DTIFVTAPHEPTSGIIGVNKKGQVLSVCVEEDNIVNYATNVLQNPDLGLRMAIRSNLAGA
EELFARKFNTLFAQGSYADAAKVAASAPKGILRTSDTIRKFQSVPAQPGQASPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKTADPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRSVMRVSPEQGLQFSQMLVQDE
EPLANINQIVDVFMENSLIQQCTSFLLDALKNNRPAEGHLQTRLLEMNLIHAPQVADAIL
GNQMFTHYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYNPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRIPAVVGGLLDVDCSEDVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDLELIKVCNENSLFKSEARYLVRRKDPELWANVL
EENNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELYEEAFAIFRKFDVNTS
AIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQKDLVKEAIDSYIKADDPSAYMEV
VQAANRNDNWEDLVKFLQMARKKARESYVETELIFALAKTNRLSELEEFISGPNNAHIQQ
VGDRCYEEGMYEAAKLLYNNVSNFARLASTLVHLGEYQAAVDSGRKANSTRTWKEVCFAC
VDGKEFRLAQICGLHIVIHADELEELISYYQDRGYFEELIALLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPTDAWKEGQFKDIIAKVANVELYYKALQFYLDYKPLLINDLLLVLSPRLDHTRTVNFFS
KVNQLLLVKPYLRSVQNHNNKGVNEALNNLLTEEEDYQGLRASIDAYDNFDNITLAQRLE
KHELIEFRRIAAYLYKGNNRWKQSVELCKKDRLYKDAMQYAAESKDAELAEKLLQWFLEE
GKQECFAACLFTCYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDGLFYKVDKL
DASESLRKEEEQVTEPTPIVFGQQLMLTAGPSAVPPQANFPYGYTAPGFTQPPVYGFNM
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggcccagatactgcccattcgcttccaggagcattttcagctccaaaatttgggcatt
aacccagcaaacattggattcagtaccctaacaatggaatctgacaagttcatctgcatc
agggagaaagtgggagagcaggcacaagtagtgataattgacatgagcgatccaacaaca
cccatcagacgtccaatttctgccgaaagtgccatcatgaatccagcctctaaagtaatt
gctctaaaagctgggaaaacacttcagatctttaacattgaaatgaaaagtaaaatgaaa
gcccacacgatggcagaggaggtgatcttctggaaatggatatctgtgaatacagttgcc
ttggtgacagagacagccgtctaccactggagcatggagggagaatcacaaccccagaag
atgtttgacaggcatgctagtcttgcaggctgccaaatcatcaattacagaacagatgaa
caccagaaatggctgctgctgataggaatttcagcacagcaaaatcgtgtggttggtgca
atgcagctgtactcggttgacagaaaagtctcccaacctatagagggccatgcagcagct
tttgcggaattcaaaatagagggaaatgccaaaccttctaccctcttctgttttgctgtg
aggagtcccgcagggggcaagctacacataattgaagtaggtcagccagctactggaaat
caaccgtttgttaagaaagctgttgatgtgtttttcccacctgaggcacagacagacttt
cctgtagcaatgcagattggagttaagcatggtgttatctacctgatcacaaagtatgga
tatattcacatgtatgacttggagtctggagtgtgcatctacatgaatcgtattagtgct
gatactatctttgtcacagcacctcatgaacctacctcaggcattattggtgtgaacaaa
aaaggacaggtgctttctgtatgtgttgaggaagacaacatagtgaactatgctacaaat
gttctccagaatcctgacttgggactgcgtatggctatacgtagtaatctggctggggca
gaggaattatttgccagaaagttcaacacgctctttgctcaaggaagctacgcagatgct
gctaaagtagctgcatctgcaccgaagggcattctacgtaccagtgatacgatcaggaag
ttccagagtgtaccagctcagcctgggcaggcctctcccctgctccagtactttggaata
ttgcttgaccagggacagctgaacaagtttgagtctctggagctctgtcgccccgtcctg
cagcagggccgcaagcagcttctggagaagtggctgaaggaagacaagctggagtgctca
gaggagctgggagacttggtgaagacagctgacccaacccttgcactcagtgtctatctt
cgtgctaatgtgccaaacaaagtgattcagtgctttgctgaaactggtcaattccagaaa
atagtgctgtatgctaaaaaggttggctataccccagattggatcttcttactgagaagt
gtgatgagagtcagtccagagcaaggcctgcagttctctcagatgctggtacaagatgag
gagccactggctaacattaaccagattgtggatgtattcatggagaacagtcttattcag
cagtgcacgtccttcctgttggatgccctgaaaaataaccgccctgcagaaggccacctt
cagactcgcctcctggaaatgaatttgattcatgccccgcaggttgcagatgccattctt
ggaaaccaaatgtttacacactacgatcgtgctcatattgcccagttgtgtgaaaaggca
ggcttactccagcgagctttggaacactacacggatctctatgatattaaacgtgctgtt
gttcatactcacctcttgaatcctgagtggctcgtgaacttctttggctctctctcagtt
gaagactctgtggagtgtttacgtgccatgctgtcagccaacattaggcaaaacctacag
ctatgtgtgcaagtcgcttctaaataccatgagcagcttggtacccagtctcttgtggag
ctctttgaatctttcaaaagctatgaaggactcttctatttcttgggttccattgtaaac
ttcagccaggatccagacgttcacttcaagtacatccaggcagcttgcaagactggtcag
ataaaggaagtggaaagaatctgccgtgaaagtaactgctataacccggaacgggtgaag
aactttctgaaggaggcaaagctcacagaccagcttcctctgatcattgtctgtgatcga
tttgactttgttcatgacctggtgctctacttatatcgcaataacctgcagaaatatata
gagatctatgtacagaaggtgaatcctagccgtataccagcagtggttggagggcttctt
gatgtggattgttctgaagatgtcattaagaacctgatcatggtggttagaggccaattc
tcaacagatgagttggtggctgaagtggaaaaaagaaatcggcttaagttgctgttgcca
tggcttgaatcaaggattcatgaaggctgtgaagaacctgcgactcataatgccttggcc
aaaatctacattgacagtaataataatccagagcggttccttcgtgagaatccttactat
gacagccgtgtagttggcaaatattgtgaaaagagggaccctcatctggcctgcgttgct
tatgagagggggcaatgtgatctggaactcataaaggtctgcaatgaaaactcactgttt
aagagtgaggctcgctatctggtgcgtaggaaggaccctgagctctgggcaaatgttctg
gaagaaaacaacccattcaggcggcagcttattgaccaggttgtccaaacagctttatca
gagacacaggatccagaggaggtttctgtaactgtgaaagctttcatgactgctgacctg
ccaaatgaattgattgagttattggaaaaaattgtcttagataattctgtattcagtgag
cacaggaatctccagaatctgctgatcctgactgccattaaggctgaccgcactcgtgtg
atggagtacatcaatcggctggataactatgatgccccagacattgcaaacattgccatc
agtaatgagctatatgaagaagcttttgctatattcagaaaatttgatgttaatacttcg
gcaattcaggtgctgattgagcacattggcaacttagaccgtgcctatgaatttgcagag
aggtgtaatgagccagcagtatggagccagctagccagagcgcagctccagaaggacttg
gtgaaagaagccatagactcctatataaaagcagatgatccatctgcttacatggaagtt
gttcaagcagctaatagaaatgataactgggaggaccttgtcaagttcttacagatggcc
aggaaaaaggctagagaatcttacgtagagacagaacttatttttgctttggcaaaaact
aatcgtctgtcagaactggaagagttcattagtggccctaataatgcccatatacaacag
gttggtgatcgctgttacgaagaggggatgtatgaagcagcaaaactactctataacaat
gtatctaactttgctcgcctggcgtctaccttggtacaccttggagagtatcaggcagca
gtggacagtggccgcaaagccaacagcacgaggacttggaaggaggtatgctttgcctgt
gtggatggaaaagaattccgcttggcacagatctgtggcctacacatagtcatccatgct
gatgagcttgaggagctgatcagttactatcaggatcgtggctactttgaagaactgatt
gcccttttggaagctgctttgggcttagagcgtgctcacatgggaatgtttactgaactg
gccatcttatactccaaattcaagcctcagaaaatgagggaacatctggagcttttctgg
tctagagttaatattccaaaggtgctcagagctgcagaacaggctcatctctgggcagaa
cttgtattcctctatgacaagtacgaggagtatgacaatgcaataattactatgatgaat
catcccactgatgcctggaaagaagggcagtttaaagacataattgccaaggtggccaat
gtggagctgtactacaaagccttgcagttctacttagactacaaacctttgctgatcaat
gatctcctgcttgtattatctccacgactggatcacaccaggaccgtcaattttttctca
aaggttaatcagctacttctagtaaagccttatctgcgttcagtccagaaccacaacaac
aaaggagtgaatgaagctctgaacaaccttttaacagaggaggaagactaccagggtttg
agagcttccattgatgcctatgacaacttcgataacataactttggctcagcgtctagaa
aagcacgaactaattgaatttaggcgtattgcagcatatttgtataaaggtaacaaccgc
tggaaacagagtgtggagctatgcaagaaagaccgtctgtataaggatgctatgcagtat
gcagcagagtccaaagatgcagaactagctgagaagctgcttcagtggttcctggaagaa
ggcaagcaggagtgctttgcagcctgccttttcacgtgttacgacttgctgcacccagat
gtagtccttgagttggcgtggaggcataacatcatggactttgcaatgccttatttcatc
caagtgatgagagagtaccttaccaaagttgatgggctgttctataaggtggataaactt
gatgcttctgaaagcctaagaaaagaagaggaacaagtaactgaacccactccaatagta
tttggccagcagttgatgttaacagcaggccccagtgcagtacctccccaggcaaacttc
ccgtatggatacacagcaccaggattcacccagccgcctgtttatggtttcaatatgtaa
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integrated database retrieval system
