Caloenas nicobarica (Nicobar pigeon): 135995482
Help
Entry
135995482 CDS
T11056
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03030
DNA replication
cnic03420
Nucleotide excision repair
cnic03430
Mismatch repair
cnic03440
Homologous recombination
cnic03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135995482 (RPA1)
03420 Nucleotide excision repair
135995482 (RPA1)
03430 Mismatch repair
135995482 (RPA1)
03440 Homologous recombination
135995482 (RPA1)
03460 Fanconi anemia pathway
135995482 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cnic03000
]
135995482 (RPA1)
03032 DNA replication proteins [BR:
cnic03032
]
135995482 (RPA1)
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135995482 (RPA1)
Transcription factors [BR:
cnic03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
135995482 (RPA1)
DNA replication proteins [BR:
cnic03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
135995482 (RPA1)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
135995482 (RPA1)
MMR (mismatch excision repair)
135995482 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
135995482 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
IBR
Motif
Other DBs
NCBI-GeneID:
135995482
NCBI-ProteinID:
XP_065502881
LinkDB
All DBs
Position
17:complement(5077576..5100105)
Genome browser
AA seq
612 aa
AA seq
DB search
MSVQLSEGAIAAIMQGENVSKPVLQVINTRAIATGNGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLAAQCICQVNRFIVNSLKDGRRVVILMDLNVLKTADKVGGNIGNPVPYNEG
QQRSSAPAANPVPSKPQQQSGNMSVAGPAAPKYHAPSNQFGKASAPSSLKTPGGSQAKVV
PIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADKF
FPLIELNKVYYFSKGTLKSANKQYTAVKNDYEITFTSETSVVPCDDAQHLPSVQFDFVSI
SDLENTPKDSIVDVIGICKSYEDVTKVIVKANNREVSKRNVHLMDTSGKLVTATLWGNEA
EQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVIINPDSPEAFKLRGWFDSEGQLLECA
SISDVRGGPVSGANTNWKTLFEAKAENLGQGDKADYFSCVGTVVHLRKENCMYQACPSQD
CNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADCLEYQWVTCFQETAEFILGQNAA
FLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAVDVKPVNYREYSKR
LIASIRRNAQLG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcagctgagcgagggcgccatcgcggccataatgcagggggagaacgtctcc
aagcccgtgctgcaagtcattaacacccgggctattgccacaggaaacggaccaccgcgt
taccgagtattgatgagtgatggggttaacaccctttcctcgttcatgttggcgacacag
ctgaactcccttgtggaagaggaacgcttggcagctcaatgtatttgtcaagtgaacagg
ttcattgtcaacagcctgaaagatggaaggagagtggttatactgatggatttaaatgtt
ctgaaaactgctgataaggttggtgggaatattggcaatccagtgccgtacaatgaaggg
cagcaacgttcttcagctccagcagcaaacccagtacccagcaaaccacaacaacaaagt
gggaatatgtcagtagcaggtcctgctgctccgaagtaccacgctccctcaaaccagttt
ggtaaagccagtgctcccagctcattgaagacaccagggggatcgcaggccaaagtggtg
ccgatcgccagcttgaacccctaccagtccaagtggaccatttgtgctcgcgttacccaa
aaaggccagatccgcacgtggagcaactcccgtggtgaaggaaagctcttttctatagag
ctagtcgatgaaagcggtgagatcagagctaccgcattcaatgatcaagcagacaagttc
tttcctctcatcgaattgaacaaggtatattatttttccaaaggcactttgaagagcgct
aacaagcaatatacagctgttaagaatgactatgaaattacattcactagtgagacttca
gttgtgccctgtgatgatgctcaacatcttccatctgttcagtttgacttcgtgtccatc
tctgacttggagaacacacccaaagactcaattgttgacgtaattggaatttgcaagagc
tatgaagatgtcactaaagttatagtgaaagcgaacaatagggaggtatcaaagaggaac
gtgcatctgatggatacatcagggaaactggtgacagctacgctgtggggaaatgaggct
gaacagtttgatggttctagacaacctgtgatagccatcaaaggagcccgagtctctgac
ttcggcggtaggagcctgtctgtcttgtcctcgagtacagttatcatcaaccctgatagc
ccagaggcttttaagctccgaggatggtttgactcggagggacagcttctggaatgtgcc
tccatctctgacgtgaggggtgggccagtgtctggggccaacaccaattggaaaactttg
tttgaagccaaagctgagaacttgggccaaggagataaggcggattattttagctgtgtg
ggcacagttgtacatctgcgcaaagagaactgtatgtaccaggcatgtccctctcaggat
tgcaataagaaagtgatagaccaacaaaatggactgtaccgttgtgaaaagtgcgatcgt
gaattccccaacttcaagtaccgcatgatgcttctcgtgaccattgcagactgtctagag
tatcagtgggtgacttgttttcaagaaacagcagaattcattcttgggcaaaacgcagct
ttcctgggagaactgaaggaaaagaacgagcaggcatttgaagaagtgttccaaaacgca
aacttcaacacgtacgagttcaggatccgagtaaaactggagacttacaatgatgaatct
cgtattaaggctacggcggttgacgtcaaacctgtgaactacagagaatacagcaagagg
ttgatcgcaagcatcaggagaaacgctcagctggggtga
DBGET
integrated database retrieval system
