Caloenas nicobarica (Nicobar pigeon): 135995495
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Entry
135995495 CDS
T11056
Symbol
CLTC
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04142
Lysosome
cnic04144
Endocytosis
cnic05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
135995495 (CLTC)
04142 Lysosome
135995495 (CLTC)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
135995495 (CLTC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnic04131
]
135995495 (CLTC)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cnic04147
]
135995495 (CLTC)
Membrane trafficking [BR:
cnic04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
135995495 (CLTC)
Exosome [BR:
cnic04147
]
Exosomal proteins
Proteins found in most exosomes
135995495 (CLTC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
TPR_1
Motif
Other DBs
NCBI-GeneID:
135995495
NCBI-ProteinID:
XP_065502900
LinkDB
All DBs
Position
17:complement(2879234..2910719)
Genome browser
AA seq
1682 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSN
PIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISDKHDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAQHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDE
EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWASVL
LESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEV
VQAANASGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMS
HPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVTFFT
KVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIIEEDYQALRTSIDAYDNFDNISLAQRLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDRLYKDAMQYASESKDTELAEELLQWFLQE
NKKECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDAIKEKVDKL
DASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPPYGQPQPGFGY
SM
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atggcccagatcctgccgatccgcttccaggagcacctccagctccaaaatctgggaatc
aacccagcgaacatcgggttcagcactctgacaatggagtctgacaaattcatctgcata
agagagaaagtaggagaacaggctcaagtggtgatcattgacatgaatgatcccagcaac
cctattcgacgaccgatttcagcagacagtgctatcatgaaccctgccagtaaagtcatc
gcattaaaagctggaaaaacgcttcaaatatttaacattgaaatgaaaagcaaaatgaag
gctcacacaatgacagatgatgtcaccttctggaagtggatctctctgaacaccgttgcc
cttgtaacggataatgccgtctaccactggagcatggagggggagtcccagcctgtgaaa
atgtttgatcgccattctagtctggctggctgccagatcatcaactaccgcacagatgcc
aagcagaagtggctgctgctgactggcatatctgcacagcaaaatcgtgttgtgggagca
atgcagctatattctgtcgatagaaaagtgtcacagccaatcgagggacatgcagcgagc
ttcgcacagttcaagatggagggaaatgctgaagaatccactctcttctgttttgcagta
agagggcaagctgggggtaagctgcatatcattgaagttggcacaccaccgactggaaat
cagccattcccaaagaaagcagtggatgtcttctttcctcctgaagcacaaaacgacttt
cctgttgccatgcagatcagtgacaagcatgatgtggtgtttctcataacgaaatatggc
tatatccacttgtatgacctggaaactggcacctgtatctacatgaacagaatcagtgga
gagaccatatttgttactgcacagcatgaagcaacagctggaattattggagtaaacaga
aagggacaagtgctctcagtgtgcgtggaagaagagaatattattccctatatcacaaat
gtgctgcagaatcctgacctagctttacgaatggctgttcgcaacaacctggcaggtgcc
gaggaactctttgccaggaaattcaatgcactgttcgcacaagggaactattctgaggca
gcaaaagtggcagctaatgctccaaagggaatcctgcgtactccagacaccatacggcgg
ttccagagtgttccagctcagccaggacagacttcccctttactccagtattttggcatt
ctgcttgaccaggggcagctgaataagtacgagtcgttggagctctgcagaccggtgctt
cagcagggacgcaaacagctcttggaaaaatggttgaaagaagataagctggagtgctca
gaggagctgggagaccttgtgaaatctgtagatcctacgctagcacttagtgtctatctg
agagccaatgttccaaacaaagtcatccagtgttttgctgaaacaggacaagtccagaag
attgttttgtatgctaagaaggttggatatactcctgactggatttttttgctgaggaat
gtgatgagaattagccctgatcaaggacagcagtttgcccaaatgcttgttcaagatgaa
gagcctcttgcagacataacacaaattgtggatgtctttatggagtataatttaattcag
caatgtacagccttcttgctggatgcactgaagaataatcgtccctcggaaggtcccctg
caaacacgtttactcgagatgaacctcatgcacgcccctcaggttgcagatgccatcctg
ggaaaccaaatgtttactcactatgaccgggctcacatagctcagctgtgcgagaaagcc
ggtttgctgcagagagcacttgaacacttcacggacctgtatgacatcaagcgtgctgta
gttcacactcatcttctcaatcctgagtggttagtgaattattttggttccttatcagtc
gaagattctctggagtgtctgcgtgccatgttgtctgctaacattcgtcagaacctgcag
atctgtgtccaggtagcttcaaaataccatgaacaactgtcaacacagtcacttattgag
ctgttcgagtccttcaagagctttgaaggtctgttttatttcctgggctctatcgtaaac
ttcagccaggatccagatgtgcacttcaagtatattcaagctgcatgcaagacaggacaa
attaaagaagtggaaagaatctgcagggaaagtaactgttatgatccagaacgtgttaaa
aacttcctcaaggaagctaaactcactgaccagttgccactcatcattgtatgtgatcgc
tttgactttgtccatgacttggtgctgtacttgtatagaaataatctccaaaaatatatt
gagatttatgtacagaaggtgaatccaagccgtctgcctgttgttatcgggggactgctt
gatgtggattgctctgaagatgtgataaagaaccttatccttgtagtgagaggtcaattt
tcaactgatgagcttgttgcagaggttgagaaaagaaacaggctgaagctgcttctgccc
tggctggaagcaagaatccatgagggttgtgaggagcctgcaactcacaatgcactggcc
aaaatctacattgatagcaacaacaacccagaaagattcctgcgtgagaatccttattat
gacagtcgtgttgtcggcaagtactgtgagaagagagaccctcacctggcctgcgtggct
tacgagcgtggacagtgcgatttggaacttattaatgtgtgcaatgagaactccctcttc
aaaagtctttcccgctacttagttcgtcgtaaagaccctgagctgtgggccagcgtctta
ctggaaagcaacccttacaggagaccactaattgaccaggttgtgcagactgcactgtct
gagacacaggaccctgaggaagtctctgttactgtgaaggctttcatgactgcagatctt
cctaatgagcttatcgaactgctggagaaaatagttcttgataactccgtgttcagtgag
cacaggaatctgcagaaccttctcattctgacagctattaaggctgatcgcacccgtgtc
atggaatacatcaatcgcctggataactatgatgctccagacattgccaacatagctatc
agcaatgagctttttgaggaggcatttgctatcttcaggaagttcgatgtcaacacatca
gctgtgcaggtattaatagagcacattggaaacctggatcgtgcgtatgaattcgctgaa
cgctgcaatgagcctgctgtgtggagtcagctggctaaagcacagcttcagaaggggatg
gtgaaggaagcaattgattcgtatattaaagcagatgatccttcctcgtacatggaagtt
gttcaagctgccaatgccagtggaaactgggaagaactggtgaagtatctccagatggca
cgcaagaaggctcgggaatcttatgtggaaacagaattaatctttgctcttgctaaaaca
aaccgtctagcagagctagaggagtttataaatggacccaacaatgcgcatatccagcaa
gttggtgatcgctgttacgacgaaaagatgtatgaagcagccaagctgttgtataacaat
gtgtccaactttggccgtttagcctcaactttagttcacctaggtgaataccaggcagct
gtggacggtgctcggaaagcaaatagcactcgcacatggaaagaggtctgcttcgcttgc
gttgatggaaaagagttccgtctggcccagatgtgtggactccatattgtagtgcatgct
gatgagttggaagagctaattaactattaccaggatcgtggctactttgaagagctgata
acgatgttggaagcagcacttggactggagcgagcacacatggggatgtttacagagcta
gcaattctctactccaaattcaagccgcagaagatgagggagcacttggagctgttctgg
tccagagtcaacatccccaaggttctgagagctgcagaacaagcccatctctgggctgaa
ctggtgttcttgtatgataagtatgaagaatatgataacgccataatcacaatgatgagt
cacccaacagatgcttggaaagaaggccagttcaaagatatcatcactaaggtggccaac
gtggagctgtattacaaggcaatccaattctatttggaatttaaacctctcttgctcaat
gatctgctgatggtgttgtcccctcggcttgaccacactcgtgctgtcaccttctttaca
aaggttaaacagctgccgctggtgaagccttacttgcgctctgttcaaaatcacaacaac
aaatcggtgaacgagtccctgaacaacctcttcattattgaagaagactaccaggctctt
aggacttctatagatgcttatgacaactttgacaacatttctcttgctcaacgtttggag
aaacatgaactaatagagttccgaagaatcgctgcatatctcttcaaaggaaacaatcgc
tggaaacagagcgtagaactctgtaagaaagacagactgtataaggatgccatgcagtat
gcttccgaatccaaagatactgagttggcagaagagttgttgcagtggttcttgcaggag
aacaagaaagaatgctttggtgcttgtctcttcacctgttacgatctcctgaggccggac
gttgtcttggaaacagcgtggaggcacaacatcatggattttgccatgccgtacttcatt
caggtcatgaaggaatacttgaccaaggttgatgcaataaaggaaaaggtggataaactg
gatgcatcagagtctttgagaaaggaagaggagcaagctacggaaacacaacctattgtt
tatggtcagccccagctgatgttgacagcgggacccagtgtggcagttcccccacaagca
ccttttggttacggctacaccgcacctccctacgggcaaccgcagcctggctttgggtac
agcatgtag
DBGET
integrated database retrieval system
