Caloenas nicobarica (Nicobar pigeon): 135995566
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Entry
135995566 CDS
T11056
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135995566 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnic03041
]
135995566 (PRPF8)
Spliceosome [BR:
cnic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135995566 (PRPF8)
Complex C
U5 SnRNP specific factors
135995566 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
135995566
NCBI-ProteinID:
XP_065503049
UniProt:
A0A7K6T5V5
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All DBs
Position
17:5166815..5186239
Genome browser
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPNPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDAEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcttcccgtaccgcggcggctgcgccccggtgcccaacccgctggcgccg
ctgcccgactacatgtctgaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctatgcggagaagaggaaattcgggttcgtggacgcgcagaaggaggac
atgccccccgagcacgtccgcaagatcatccgtgaccacggcgacatgaccaatcggaag
ttccggcacgacaaacgcgtctacctgggcgctctgaagtacatgcctcatgctgttctg
aagctcttggagaacatgcccatgccctgggagcaaatcagagacgttccggtcctgtac
catatcacaggcgccatctcttttgtgaatgagattccctgggtcatagagccagtgtac
attgctcagtgggggtcgatgtggattatgatgaggcgagagaagagagacaggcgtcac
ttcaagaggatgagattccccccgtttgatgatgaagaaccccctttggattatgcagat
aacatcctggatgtggagcccctggaagcgattcagcttgagctggacgccgaggaggat
gcccctgtgctggactggttctacgaccaccagccgctcaaagacaacaggaaatatgta
aatggttcaacgtaccagcgctggcagttcactctcccaatgatgtccacgctgtaccgg
ctggctaatcagctgctcactgacctagtggatgacaattatttctatttgtttgacctg
aaagcgttctttacctccaaggcgctgaacatggctattcctggaggtcccaagttcgag
cctcttgttagagacatcaatcttcaggatgaagactggaatgaatttaacgacatcaac
aaaattatcatcaggcagccgatcaggacagagtacaaaatcgctttcccgtacctgtac
aacaacctgccacaccacgtccacctgacctggtatcacactccaaacgtcgttttcatt
aaaacagaagatcctgatctcccagctttttactttgatcctctgatcaacccaatttca
cacagacattctgtcaagagtcaggaaccattgcctgatgatgatgaggagttcgagttg
ccagagtttgtggaacctttcctgaaggataccccgctctacacagataacacagcaaac
ggcatcgccctgctctgggccccgcggcctttcaacttgaggtctgggaggactcggaga
gctcttgatatcccactggtcaagaactggtatcgtgagcactgcccggcaggccagcca
gtgaaagtgcgagtctcctatcagaaactactgaaatactacgttctgaacgcacttaag
cacagaccccccaaggcccagaagaagaggtacctgttccgctccttcaaggccacaaag
tttttccagtcgacgaagctggactgggtggaagtgggtctgcaggtctgtcgccagggc
tacaatatgctgaacttgctgatccacagaaagaacctgaactaccttcacttggattac
aacttcaacctgaagcctgtgaagaccctcacaactaaggaaaggaaaaaatctcgtttc
ggtaatgctttccatctatgccgagaggttctgcggctgactaagttggtggtggacagc
cacgtccaatacaggcttggaaatgtggatgcatttcagttggcagatggcttgcagtac
atcttcgcccacgtgggtcagctgacaggaatgtaccgatacaagtacaaactgatgagg
cagattcgtatgtgcaaggacctgaaacatctcatctactacaggtttaacactgggcct
gtgggcaaaggtcctggctgtggcttctgggctccaggctggagagtgtggctgttcttc
atgaggggcatcacgccgctgctggagcgctggctggggaatctgctggccaggcagttt
gaaggccgtcactcaaagggtgtagcaaagactgtcacaaagcagcgtgtggagtctcac
tttgacctggagctgagggcagccgttatgcatgacattctggacatgatgccagaagga
atcaaacagaacaaagccagaaccatcctgcagcatctgagcgaggcttggcggtgctgg
aaggccaatattccctggaaggtgccagggctgccaactcctattgagaacatgatcctg
aggtatgtgaaggcaaaagctgactggtggacaaatacagctcactacaacagggagcgg
atccgccggggtgccactgtggacaaaaccgtctgtaagaagaatctgggccggctgacc
agactctacttaaaagctgagcaggagcggcagcataattacttgaaggatgggccttat
atcaccgcagaagaggctgttgctgtgtacacaaccacagtgcactggctggaaagcagg
aggttctcacccattcccttccccccactgtcctacaaacatgacaccaagttgctcata
ttagccctggagaggctgaaggaagcttacagtgtgaaatctcgcctgaatcagtcacag
agagaggagttgggcttgattgaacaggcttatgataatcctcatgaagctctgtccaga
atcaaacgacaccttttaactcagagagccttcaaggaggtgggtattgagttcatggat
ctctacagccacttagttcctgtttatgatgttgagcccttggagaaaattacagatgct
tatctggatcagtacttgtggtatgaggctgataaacgaagactcttccctccatggatc
aaacctgctgacactgaacctcctccgctgttggtgtacaagtggtgtcaaggcattaat
aatctgcaagatgtttgggaaacgagtgaaggtgaatgcaatgtgatgctggaatctcga
tttgagaagatgtatgagaagattgacctgacgttgctcaacaggctcttgcgtcttatt
gttgatcacaacattgctgactacatgacagccaagaacaacgtggtgatcaactacaag
gacatgaatcacacgaactcctacggaattattcgtgggctgcagtttgcttccttcatc
gtccagtattatgggcttgtgatggacctgctggtgctgggtctgcaccgtgccagcgaa
atggcggggcctccccagatgccaaatgacttcctcagcttccaagacattgccactgag
gtggcccatcccattcgcctcttctgcagatacattgaccgtattcacatcttcttcagg
tttacagcagatgaggcaagagacttgattcagcgatacttgaccgagcatccagatccc
aacaacgagaacattgtgggctacaacaacaagaagtgctggccccgggatgctcggatg
cgcctcatgaaacatgatgtgaaccttggtcgtgctgtattctgggatatcaagaaccgt
ttgcctcgatcggtcaccacagtgcagtgggagaatagcttcgtgtccgtttacagcaag
gataaccccaatttgctgtttaacatgtgtggctttgagtgccgcatcttgcccaagtgc
cgcaccagctacgaggagttcacccacaaggatggtgtctggaacctgcagaatgaggtc
accaaggagcgcacagctcagtgcttcctgcgcgtggatgatgagtctatgcagagattt
cacaacagagtgaggcagatcctcatggcctctggctccacaaccttcaccaagattgtc
aataaatggaatacagctctcattggcttgatgacgtatttccgagaggctgttgtaaat
actcaggagttgcttgatttgctggtgaaatgtgagaataaaatccagactcgaatcaaa
atcggtctgaattccaaaatgccgagccgttttccgccagtggtgttctacacccctaaa
gaactggggggcctgggcatgctctccatgggccacgttctcatcccgcaatctgacctg
aggtggtccaagcagacagatgttggcatcactcacttccgctcaggaatgagtcacgag
gaggaccagctcatcccaaatttgtatcgttacatccagccatgggaaagtgaatttatt
gactctcagagagtatgggcagagtatgccctgaagcgacaagaagcgatcgcgcagaac
aggcgtctgacactggaggatctggaagactcatgggacaggggaattcctcgtattaac
acccttttccagaaggaccggcataccttagcatatgataaaggatggagagtcagaact
gacttcaagcagtatcaggtcctgaagcagaacccattctggtggacgcatcagcgccat
gacgggaaactctggaacctgaacaactaccgcacagacatgatccaggcgcttggtgga
gtggaagggatcctggagcacactctcttcaagggcacttacttccccacatgggagggt
ctcttctgggagaaggctagtggctttgaggaatccatgaagtggaagaagctgacgaat
gcccagagatcgggtttgaaccaaattccaaacagaagattcaccctctggtggtctcct
accattaacagagcaaatgtatatgttgggtttcaggtgcagctggatttgacaggcatc
ttcatgcacggcaagatacccacgctgaagatttctctcattcagattttccgggctcac
ttgtggcaaaagatccatgagagtattgtcatggatttgtgtcaggtgtttgatcaagaa
ctggatgctctggagattgagacagtgcagaaagagacgatccatcccaggaagtcgtac
aagatgaattcctcatgtgcagatatcctcctctttgcttcctataagtggaatgtgtca
cgtccatcattgcttgcagattccaaagatgtgatggacagcaccaccactcagaagtac
tggatagatatccagctgcgctggggagattacgattcccatgatatcgagcgctatgca
agagccaagttcctggactacacgacagacaacatgagtatctatccgtctcccaccggt
gtgctcattgccatcgatctggcctataacttgcacagtgcttatgggaactggttccct
gggagcaaacccctgatccaacaggctatggccaaaattatgaaagcaaatcccgcactg
tatgtgttgagagaacgaatccgcaagggcttgcagctgtactcctccgagcccacagag
ccgtacctgtcctctcagaactatggagagctcttctccaaccagatcatctggtttgtg
gatgacaccaatgtgtacagagtgaccattcacaagacttttgaagggaatttgaccaca
aaacccatcaatggagccattttcatcttcaatcccagaactggacagctcttcctcaag
attatccatacgtctgtgtgggcaggacagaagcgtctaggacagctggccaagtggaag
actgctgaagaagtggctgccttgattcgttcacttcctgtggaggagcagccgaagcag
atcatagtgacgcggaagggcatgttggatccacttgaggtgcacttactggacttcccc
aatattgtcatcaaaggctcagagttgcagctgcccttccaggcctgtctgaaagtggag
aagtttggtgatctcatcctgaaggctaccgaaccccaaatggttctcttcaatctctat
gatgactggctgaaaaccatctcttcctacacggcattctctcgtctgattctgattctc
cgggcactacatgtgaataatgatcgagccaaagttattctgaaaccagacaagacaacc
ataacagagcctcaccacatctggccaaccttgacagatgaggagtggatcaaggtggag
gtgcagctgaaggatctcatccttgctgactatggcaagaagaacaatgtgaacgttgca
tccctgacacagtcagagatccgagacatcatcctgggcatggagatctctgccccctct
cagcagagacagcagattgcagaaattgagaagcaaaccaaggagcagtcgcagctgaca
gccacgcagacccgcaccgttaacaaacatggtgatgaaatcatcacctctacaaccagc
aactacgaaacccagactttctcctccaagactgagtggcgagtcagagcgatttctgct
gccaacctccacctgcgaacaaaccacatttacgtttcatcagatgatataaaggaaacg
ggctatacctacattcttcccaagaatgttttgaagaaattcatctgcatctcagatctg
cgggcccagattgcaggttacctgtatggagtgagccctcccgataacccccaagtgaag
gagatccggtgcatcgtgatggtgcctcagtggggaacacaccagactgtgcatctcccg
gggcagctgccgcagcacgagtatctcaaggaaatggaacccctggggtggattcacacc
caaccaaacgagtcccctcagctctcgccgcaggacgtcaccacccatgccaaggtcatg
gccgacaacccctcctgggatggggagaagaccatcattatcacctgcagttttacaccg
ggttcctgcacgctgacagcctacaaactgactcccagcggctacgagtggggcaggcag
aacacggacaaagggaacaaccccaagggctacctgccctcccattacgagagggtgcag
atgctgctgtctgatcgcttcctcggcttcttcatggtcccagctcaagggtcctggaac
tacaacttcatgggtgttcgccacgaccccaacatgaagtacgagctccagctcgccaac
cccaaggagttttaccacgaggtccatcgcccttctcatttcctcaacttcgccctgctg
caggagggggaggtctactccgccgaccgcgaggatctctacgcctga
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