Caloenas nicobarica (Nicobar pigeon): 135996129
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Entry
135996129 CDS
T11056
Symbol
GRIN2C
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04020
Calcium signaling pathway
cnic04080
Neuroactive ligand-receptor interaction
cnic04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
135996129 (GRIN2C)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
135996129 (GRIN2C)
04082 Neuroactive ligand signaling
135996129 (GRIN2C)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cnic04040
]
135996129 (GRIN2C)
Ion channels [BR:
cnic04040
]
Ligand-gated channels
Glutamate (ionotropic)
135996129 (GRIN2C)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
NMDAR2_C
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
135996129
NCBI-ProteinID:
XP_065503948
LinkDB
All DBs
Position
18:5283291..5298354
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AA seq
1576 aa
AA seq
DB search
MSPTAALCTPPAFPGAVGWGEPGGLWGSVPFCGEFSHLGKEXGREGGLAPRFPQRWGRPR
VQGEAGRFRRGRAARLQPPFPGAGGQPRSCGEAGGHTSCPSTAPVXPRPGHPSPQPLHTA
GSSRPSRPGSPSGPGTGGVGDGCWGPAATETPAATGPPPVHNRSAPSFLRSRPCLQPPLQ
RSRRLLQGRAGTDSGRWTPPPAAAAAGADPAPPGGCPGGGGAGWKEPSLRWDAKPRRACR
HRAAAVPDAAVDMGRALAHALLLSMVLGCSAAFTDLLLPGPEEPVVNVAVVFGGTSYPLH
IRTRLSPQSFLDMPLEIHPITVIVNNTNPSTLLTQICGILASHKIHGIVFEDNVGTEAVA
QILDFISSQTQVPVISISGGSAVVLTPKEPGSAFLQLGVSIEQQIQVIFKVLEEYDWGSF
AVITSLYPGYNIFLDVIRSFTDASYFGWELQEVLTFEMSQERSSSRMQRLLRQIDAQVLI
VYCSREEAEYLFAMAEQAGLVGPGYVWIVPSLAVGNMEVPPASFPVGLISVVTESWKLSL
RQKVRDGVAIIAMGAASFFRAHGYLPEVGRDCWTPAGTTTTNTSFYRHLLNVTWEHRDFS
FNEGGYLVRPTMVVISLNQHRLWEMVGKWEKGIIHMKYPVWPRYGSFLQPVADNRHLTVA
TLEERPFVIVENTDPSTGVCVRNTVPCRKQTNSSQSSDGLVDPYTKLCCKGFCIDILKKL
AKTVKFSYDLYLVTNGKHGKIVRGVWNGMIGEVYYKRADMAIGSLTINEERSEIVDFSVP
FVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNQN
LTSGKRPGGPTFTIGKSVWLLWALVFNNSVPIENPKGTTSKIMVLIWAFFAVIFLASYTA
NLAAFMIQEQYIDTVSGLSDRKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPDMHTHMVK
YNQRSVEDALTSLKMGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQK
DSRWKRAIDLALLQFLGDGETQKLETVWLSGICQNEKNEVMSSKLDIDNMAGVFYMLLVA
MGLSLLVFAWEHLVYWKLRHSVPKSHKLDFLLAISRGIYSCFSGVQTLASPRRAPTPDVT
ASSAQANVLKMLQTAKEMVTTASVGGSLEQATRTIEDWSSRSERLQTTFSLRTPQLVIQN
STGAHRAPSSNRDPPERQGRAKSSLGLPLPQPIPVDSRLPGEKWRGANQHVPRLPHPLKF
RGGCGGDEAVPGFPHLLVKTSPGGDFEEQVLMGNHIGAPLPPPTSPRDLPPPDIYREHKW
PTGRGDQLQNPPLLQGDGGHGGSGTLPRLLSAAEKRREVGSLFLPPSCPRGAFPKATRTC
RAGDELARPEAAVMEQEKPNWRARALGEQGDKQRPGWLRRCRAAHPSARADVPDLFPEAE
AGHSCGPRCPQAAGRLAPRSPVARLPSYREACRQNPRGTGTVPPYACVDSYPNPPLYLGH
LSWGSPPPRLHPGVPAGCHRVTGRWDSGCRDCGRRGEPALLRAAGTERRDLLVAREVTSP
CAGGSWRRVSSLESEV
NT seq
4731 nt
NT seq
+upstream
nt +downstream
nt
atgagtccaaccgcagccctttgcacccctccagcttttccgggggctgtggggtgggga
gagcccggggggttatgggggtctgtgccgttttgcggtgagttttcccacctgggaaag
gagngagggagggaggggggtcttgccccccgctttccccagcgctggggccggcctcgg
gtgcaaggggaggcgggcaggtttcggcgggggagggctgcccgcctccaaccccccttc
cctggggctggcggccagccccgaagttgcggcgaggcgggaggacacacgtcctgtcct
tccaccgctcccgtcngcccccgccccgggcatccatccccgcagcccctccacaccgcc
ggctcctcccggccgtcccgcccgggcagcccctccggtcccggtaccgggggagttgga
gatggctgctggggcccggcggccaccgagacacctgctgccaccgggcccccccccgtg
cacaaccgctccgctccctccttcctccgctcccgtccctgcctccagccgccgctgcag
aggagccgccgcctcctccaaggacgagccgggaccgacagcggccgctggacccccccg
ccagccgcggcggcggcaggggccgatcctgccccccccgggggctgccccggaggagga
ggagcgggctggaaagagccgagcctccggtgggacgcgaagccccgccgggcatgtagg
caccgagcagcggcggtcccggacgcggcggtggacatgggcagagcgctggcacacgct
ctgctactgtcgatggtgctgggctgctcggctgccttcacggacctcctgctgccgggc
cccgaggagccggtggtcaacgtggccgtggtgtttgggggcacgtcctaccccctgcac
atccgcacccgcctgagcccccaaagcttcctggacatgcccctggagatccaccccatc
accgtcatcgtcaacaacaccaaccccagcaccctcctcacccagatctgcggcatcctc
gccagccacaagatccacggcattgtcttcgaggataacgtcggcacggaggccgtggcc
cagattctggacttcatctcctcccagacccaggtccccgtcatcagcatcagcgggggg
tctgccgtggtcctgacccccaaggagcctggctcggctttcctgcagctgggcgtctcc
attgagcagcaaatccaggtgatcttcaaggtgttggaggaatacgactggggctccttc
gctgtcatcaccagcctctacccgggctacaacatcttcctggacgtcatccggtccttc
acggacgccagctactttggctgggagctgcaggaggtgctcaccttcgagatgagccag
gagcggagcagctccaggatgcagcggctcctgcggcagatcgatgcccaggtcctcatc
gtctactgctcacgagaggaggccgagtacctcttcgccatggcggagcaagctgggctc
gtggggccaggctacgtctggatcgtgcccagcctggcggtgggcaacatggaggtacca
cccgcctccttccccgtcggcctcatcagcgtggtgacagagagctggaagctgagcctg
cggcagaaggtgcgggatggggtggccatcattgccatgggggcggccagcttcttccgg
gcccatggctacctcccggaggtgggacgggactgctggacccctgctgggaccactacc
accaacaccagcttctaccggcacctcctcaacgtgacgtgggagcacagggacttctcc
ttcaatgaaggtggctacctggtcaggcccaccatggtggtgatctcgctcaaccagcac
cggctctgggagatggtgggcaagtgggagaaaggcatcatccacatgaagtacccggta
tggccccgctacggctccttcctgcagcctgtggccgataaccgccacctgacggtggcc
acgctggaggagagacccttcgtcatcgtggagaacacggaccccagcaccggggtctgc
gtgcgcaacaccgtgccctgccgcaagcaaaccaactcctcgcagagtagcgatggcctc
gtggatccctacaccaagctgtgctgcaagggcttctgcatcgacatcctgaagaagttg
gccaagacggtgaagttctcctatgacctttacctggtgaccaacggcaaacacggcaag
atcgtccgcggggtctggaacggcatgattggtgaggtgtactacaagcgtgcagacatg
gccatcggctccctaaccatcaacgaggagcgctctgagatcgtggacttctccgtgccc
ttcgtggagacgggcatcagcgtcatggtggccaggagcaacggcaccgtctccccctcc
gccttcctggagccctacagcccagccgtgtgggtcatgatgttcgtgatgtgcctcacc
gtggtggccgtcactgtcttcgtgttcgagtatttcagccccgtcggctacaaccagaac
ctcaccagcggcaagaggccgggaggccccacctttaccatcggcaagtcggtgtggctg
ctgtgggctctggtcttcaacaactcggtgcccatcgagaaccccaagggcaccaccagc
aagatcatggtgctcatctgggccttcttcgccgtcatcttcctcgccagctacaccgcc
aacctggccgccttcatgatccaggagcagtacatcgacaccgtgtcggggctgagcgac
aggaagtttcagaagccgcaggagcagtaccccccgttccgcttcggcaccgtccccaac
ggcagcaccgagaggaacatccgcagcaactaccccgacatgcacacccacatggtgaag
tacaaccagcgctccgtggaggatgctctcaccagcctcaaaatggggaaactggacgcc
ttcatctacgacgccgctgtgctcaactacatggcaggcaaggacgagggctgcaagctg
gtgaccatcggcagcgggaaggtgtttgccaccacgggctatggcatcgccctgcagaag
gactcgcgttggaaacgggccattgacctggccctgctccagttcctgggggacggtgag
acccagaagctggagacggtttggctgtcagggatctgccagaacgagaagaacgaggtg
atgagcagcaagctggacattgacaacatggccggggttttctacatgctgctggtggcc
atggggctgagcctgctggtcttcgcctgggagcacctcgtctactggaagctgcgtcac
tctgtgcccaagtcccacaagcttgactttctcctggccatcagcaggggcatctacagc
tgcttcagtggggtgcagaccctggccagccccaggcgagcgcccactcccgacgtcacc
gccagctcagcccaagccaacgtgctgaagatgctgcagacggccaaggagatggtgacg
acagccagcgtgggggggtcgctggagcaggccacccgcaccatcgaggactggagcagc
cgcagcgagcgcctccagaccaccttctccctcaggacaccccagctggtgatacagaac
agtaccggtgcccaccgggccccctcctccaaccgggacccccccgagaggcaggggaga
gccaagagttccctggggctgccgctgccccagcccatccccgtggactcccggctgcct
ggggagaagtggagaggggcgaaccagcacgtcccccgcctcccgcaccccctgaagttt
cggggtggctgtgggggggatgaagccgtcccaggtttcccccacctcctggtgaagacc
tccccgggaggggattttgaggagcaggtactgatggggaaccatattggggctcccctc
ccgccccccacatcccccagggacctcccgccgccggacatctacagggagcacaagtgg
ccaacggggcggggggaccagctgcaaaaccctcccctcctccagggggacgggggacac
ggtggctcggggacgctgccccggctgctctcggcagcagagaagaggcgggaggtgggc
agcctcttcttgccaccatcctgcccacgtggcgccttccccaaagccaccaggacttgc
agagccggggatgagctggcccggccggaggctgcggtgatggagcaggagaagccgaac
tggcgggcaagggcactgggggagcagggtgacaagcagcgtcccgggtggctgcgacgc
tgccgtgctgcccacccctcagcccgtgccgacgtgccagacctcttccccgaagccgag
gccggtcacagctgcggtccccgctgtccccaggccgctggccggctggcaccgcgctcg
cccgtggccaggctaccgtcataccgggaggcttgtcggcaaaacccccgtggcaccggc
accgtgccgccgtacgcctgcgtggactcgtaccccaacccgcccctctacctggggcac
ctctcctgggggtccccgccgccacggctgcaccccggggtgccggcgggctgtcaccgg
gtgaccgggcgctgggacagtggctgcagagactgcgggaggcggggggaaccggccttg
ctgcgggcagcggggacggagaggagggacctgctggtggcccgcgaggtgacgagtccc
tgcgccggcgggtcctggcggcgggtgtccagcctggagtcggaggtgtga
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