Caloenas nicobarica (Nicobar pigeon): 135996502
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Entry
135996502 CDS
T11056
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
KO
K08524
retinoid X receptor alpha
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03320
PPAR signaling pathway
cnic04148
Efferocytosis
cnic04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
135996502 (RXRA)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
135996502 (RXRA)
03320 PPAR signaling pathway
135996502 (RXRA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cnic03000
]
135996502 (RXRA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cnic03310
]
135996502 (RXRA)
Transcription factors [BR:
cnic03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
135996502 (RXRA)
Nuclear receptors [BR:
cnic03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
135996502 (RXRA)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
CRT10
Motif
Other DBs
NCBI-GeneID:
135996502
NCBI-ProteinID:
XP_065504633
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All DBs
Position
19:8569830..8676023
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AA seq
467 aa
AA seq
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MDTKHFLPLDFSNQVNSTSLNSPTSRGPMATPSLHPSIGPGIGSSLGSPGQLHSPISTLS
SPINGMGPPFSVISSPMGPHSMSVPSTPSLGFGTSSPQLNSPMNPVSSSEDIKPPLGLNG
VLKVPAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKI
LEAELAVEPKTETYIEANMGLTPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLD
DQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVS
KMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRF
AKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggacaccaaacacttcctgccactggatttctccaaccaagtgaattccacgtccctg
aactctcccacgagccgggggccaatggccaccccatccctccacccgtccatcgggccg
ggcatcggctcctcgctgggctccccgggccagctccactcgcccatcagcaccctgagc
tcgcccatcaatggcatgggacctccgttctccgtcatcagctcccccatgggaccgcac
tcaatgtccgtcccctccacccccagcctgggattcggcaccagcagcccacagctcaac
tcgcccatgaaccccgtcagcagctcagaagacattaagccacccctggggctcaatgga
gtcctcaaagtgccagcacatccctcaggaacgatggcttccttcaccaagcacatatgt
gccatctgcggggacagatcttcaggtaaacattacggggtttacagctgcgagggctgc
aaaggcttcttcaagcgcacggtgcggaaagacctcacctacacctgccgcgacaacaag
gactgcttgatcgacaagcgccagcgcaaccgctgccagtactgccgctatcagaagtgt
ctggcgatggggatgaagcgagaagccgtccaggaggagaggcagcgggggaaggaccgc
aacgagaacgaggtggagtcaacaagtagcgctaacgaggacatgcccgtggaaaagatt
ttggaagctgaactcgccgtggagccaaagacagagacgtacattgaagcaaatatgggc
ttgacgccgagctcgcccaatgacccggtgacgaacatatgccaggcagcagacaagcag
ctcttcaccctggtggaatgggccaagaggatcccgcacttctccgagctgcccctggac
gaccaggtcattttgctcagagcagggtggaatgagctcctaatcgcctccttctcccac
cgctccatagcagtgaaagacgggatcctcttggccaccgggctccacgtgcaccggaac
agcgcgcacagcgctggcgtcggggccatcttcgacagagtactgacagaactcgtgtca
aaaatgcgagacatgcagatggacaagacggagctaggctgcctgcgagccattgtcctc
ttcaaccccgactcaaaaggtctctccaacccagctgaagtggaggcgttacgggagaag
gtgtacgcgtcgctagaggcatattgcaaacacaaataccccgaccagcccgggaggttc
gcaaagctcttgctccgtctcccagccctccggtccatcggcctgaaatgcctggagcac
ctcttcttcttcaagctaataggtgacacgccgatcgacaccttcttgatggaaatgctg
gaagcgccccatcaaatgacttaa
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