Caloenas nicobarica (Nicobar pigeon): 135996540
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Entry
135996540 CDS
T11056
Symbol
CACNA1B
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04010
MAPK signaling pathway
cnic04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
135996540 (CACNA1B)
04020 Calcium signaling pathway
135996540 (CACNA1B)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cnic04040
]
135996540 (CACNA1B)
Ion channels [BR:
cnic04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
135996540 (CACNA1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
135996540
NCBI-ProteinID:
XP_065504696
LinkDB
All DBs
Position
19:2803323..3087423
Genome browser
AA seq
2357 aa
AA seq
DB search
MARFGDDLPTRYGGAGPAGAGRGSSRQGGPQAGQRMYKQSMAQRARTMALYNPIPVKQNC
FTVNRSLFIFSEDNVIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPDGDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTGILATAGTDFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIGLEFYMGK
FHKTCFSNETGDEVGDFPCGEEPPARQCESGTTCREYWQGPNYGITNFDNILFAVLTVFQ
CITMEGWTDILYNTNDAAGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVENR
RAFLKLRRQQQIERELNGYLEWIFKAEEVMLAEEDKNAEEKSPLDGRAASEGPIQQGTAP
AETSSGSSYNMLKRAAIKKSKNDLIHAEEGEDHFTDICSVGSPFARASLKSGKNESSSYF
RRKEKMFRFFIRRMVKAQSFYWIVLCVVALNTLCVAMVHYDQPEKLTTALYFAEFVFLGL
FLTEMSLKMYGLGPRNYFHSSFNCFDFGVIVGSIFEVIWAAVKPGTSFGISVLRALRLLR
IFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFQDETPTT
NFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVRSGMFSSIYFIVLTLFGNYTLLNVF
LAIAVDNLANAQELTKDEEEMEEATNQKLALQKAKEVAEVSPMSAANISIAAKQQNSSKS
KSVWEQRTSQIRMHNFRASCEALYNELDPEERVRYATTLHIRPDMKTHLDRPLVVEPRAE
GRNNISKLSPVDVQEVEQSKVGSTDGAEAPRKHHRHREKDKLGEQEKGDVTKDENGESGA
NNKEERHRQHRSRSKEVEAGGKEGKSDRNRGQEGGKRHHRRGSVEEGAEKEHRRHRTHRH
SAERQGKEGNGTVNGARGERRSRHRGGSRAANREGEPGSKGENGEEPHRRHRFRNRALST
YDSVEKESGEKEGEAAEKEHRNHQPKENQCEIEASGSGSVPVHTLPSTYLQKVLEQPEDA
DNQKNVTRMIQPPLDKTTTVNIPVTITAPPGETTVIPMNSVEFESKTEEKKDVDDLTKDG
PKPILPYSSMFILSPTNPIRRLFHYIVNLRYFEMVILIVIALSSIALAAEDPVQAESPRN
DALKYLDYIFTGVFTFEMVIKMIDLGLLLHPGSYFRDLWNILDFIVVSGALVAFAFSGTK
GKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIA
VQLFKGRFFYCTDESKELEKDCRGQYLDYEKNEVEAQPREWKKYEFHYDNVLWALLTLFT
VSTGEGWPTVLKHSVDATYEEQGPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQ
EQGDKVMSECSLEKNERACIDFAISAKPLTRYMPQNKQSFQYKMWKFVVSPPFEYFIMVM
IALNTIVLMMKFYDAPEAYEEMLKCLNIVFTSMFSMECVLKIIAFGVLNYFRDAWNVFDF
VTVLGSITDILVTEIADTDNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALP
YVCLLIAMLFFIYAIIGMQVFGNIALDDETSINRHNNFRTFLQALMLLFRSATGEAWHEI
MLSCLSNRACDPLSGLTKNECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDS
SILGPHHLDEFVRVWAEYDPAACCRIHYKDMYNLLRVIAPPLGLGKKCPHRVAYKRLVRM
NMPISPEDLTVHFTSTLMALIRTALEIKLASGGVKQHQCDAELRKEISLVWPNLSQKTLD
LLVPPHKPDEMTVGKVYAALMIFDFYKQNKNSREQVHQPAGGLCQPGPVSLFHPLKATLE
QTQPAAFSNAKAFLRQKSSASLNNGGALPAPEGGIKESSSWGTQRTQDVFYETRTPAFER
GHSEEIPIERVVEMREISPTLANGEHQPGLESQGRAASMPRLAAETQRSKARSPGSYLAP
IPDTSPMKRSVSTLTPQRPHPMHLYEYSLERMPPEQGHHHHHHRCHRRKEKKQKSLDRSP
HQLADGEAVAQSGESSSKDKKQERGRSQERKQHSSSSSEKQRFYSCDRYGSRDRSQPKSA
DQSRPTSPNGGPEQGPHRQGSGSVNGSPLLSTSGASTPCRGRRQLPQTPLTPRPSITYKT
ANSSPVHFTSFQTGLPTFSPGRLSRGLSEHNALLRGDQQPAPPAVARIGSDPYLGHRDDG
DSPYRAVPEDTLTFEEAVATNSGRSSRTSYVSSLTSQSHQIRRVPNGYHYTLGLNAGPGT
GTRGRSYYHEADEDDWC
NT seq
7074 nt
NT seq
+upstream
nt +downstream
nt
atggctcggtttggggatgatctgccgacccgctatggaggtgcagggccggccggggct
ggaagagggagcagccggcaaggtggcccccaggccggccaaaggatgtataagcagtcg
atggctcagagggctaggactatggctctctacaatcccatccctgtcaaacagaactgc
ttcacagtcaacagatccctcttcatcttcagtgaagataatgttatacggaaatacgcc
aagagaataacagaatggcctccatttgaatacatgattttagctacaatcatagccaat
tgtattgtgctggctctggaacaacatttgccggatggagacaagacacctatgtcagag
agattggatgacactgagccgtactttattggaatattttgttttgaagccggtataaaa
atcattgctctggggtttgtttttcataaaggctcttacctccgaaatggttggaacgtg
atggattttgtcgtggtcctcacagggattttagcaactgctgggactgattttgacctg
cggaccctgcgagccgtccgagtgttacggcctctgaagctcgtgtcgggaatcccaagc
ttgcaggttgtcctcaagtccatcatgaaggcgatggtgcccttgcttcagatcgggctg
ctcctcttcttcgccatcgtgatgtttgccatcatcgggctggagttctacatggggaag
tttcacaaaacctgcttctctaacgagacaggtgatgaggtgggagattttccgtgcgga
gaggagcctcctgcccggcagtgcgagagcgggaccacctgcagggagtactggcaaggg
cccaactacggcatcaccaacttcgacaacatcctcttcgccgtgctcactgtcttccag
tgcatcaccatggagggatggaccgacatcctctacaatacaaatgatgctgcaggaaac
acctggaactggctttacttcatccctctcatcatcattggctctttcttcatgctcaac
ttggtgctgggcgtcttatcaggcgaatttgccaaagaacgagaaagggtagaaaatcgt
cgagctttcctgaagctccgtaggcagcagcaaattgaacgggagctcaatgggtacttg
gagtggatcttcaaagcagaggaggtcatgctagcagaggaagacaagaacgcggaagag
aaatctcctctggacgggagggccgcctcggaagggccgattcaacaaggcacggcaccg
gcagagactagcagcggcagcagctacaacatgttgaaaagagccgcaataaagaagagc
aaaaatgacctgattcatgctgaagaaggtgaggaccatttcacagacatttgctccgtt
gggtctccttttgcccgtgccagtttgaagagtgggaagaacgagagctcgtcctacttc
aggaggaaagagaaaatgttccggttcttcatccggcgcatggtgaaagctcagagcttc
tactggatcgtcctctgcgtggtggccctcaacacgctctgtgtcgcgatggtgcactac
gaccagccggagaagctcaccactgcgctctattttgcagagtttgtttttctgggtctg
ttcctaactgagatgtcactgaagatgtacggactggggccaagaaattacttccactct
tcattcaactgctttgactttggggtcattgtgggaagtatatttgaagttatttgggct
gcggtgaaaccaggtacctcgtttggcatcagcgtgttgagggctcttcgactgctgagg
attttcaaagtaacaaagtactggaattccctgaggaatctggtggtctccttgctcaac
tccatgaagtccatcatcagtttgctcttcctgctgttcctgttcatcgtggtgtttgct
ttgctggggatgcagctctttggaggacaattcaacttccaagatgaaacaccaaccacg
aatttcgataccttccctgctgccatcctcacagtattccagatcctgacgggagaagac
tggaacgccgtgatgtaccacgggatagagtcacagggtggtgtccgctcagggatgttc
tcctccatttacttcatcgtcctgacgttgtttggtaactatacacttctgaatgtcttt
ttggccatcgctgttgacaatctggcgaatgcccaagagctgaccaaggacgaggaggag
atggaagaagccaccaaccaaaagcttgccctgcagaaggccaaagaggtggccgaagtc
agccccatgtctgcagcgaacatctccatagccgccaagcagcagaattcctccaaatcc
aagtcggtttgggagcagaggaccagccagatccggatgcacaatttccgagccagctgc
gaggcgctgtacaacgagctggacccagaggagcgggtgcgttacgccaccactcttcac
attcggccagacatgaagactcatttggaccggccgctggtggtagagccgagggccgaa
gggaggaacaacatcagcaagctgagccctgtggacgtgcaggaggtggagcagagcaaa
gtcggctctaccgatggggcagaagctccacggaagcaccaccggcatcgggagaaggac
aaactgggcgagcaagagaagggtgacgtgactaaggatgaaaacggggagtccggcgcc
aacaataaggaggagcggcacaggcagcacaggagccgcagcaaggaggtggaagcgggg
ggtaaggaagggaaaagcgatcgcaacaggggccaggaagggggaaagaggcaccatcgc
cgagggtcggtggaagaaggtgcagagaaggagcaccgccggcatcggactcaccggcac
tccgccgaacggcaaggcaaggaaggcaacgggacggtcaacggggccaggggcgagcgg
cgttcccgacaccggggagggtcgagggctgcgaaccgggaaggggagcccgggtccaag
ggcgagaatggagaagagcctcacagacggcaccggttcaggaacagggcgctgtcgacg
tacgattcggtggagaaggagagcggggagaaggagggggaggctgctgagaaggagcac
cggaaccatcagcccaaggagaatcagtgtgagattgaggcgagcgggagcgggagcgtc
ccggtgcacacccttcccagcacctacctgcagaaagtgctggagcagccagaagatgcc
gacaaccagaagaatgtgacgcggatgattcagccgcctctggacaaaaccaccactgtg
aacatccccgtcactatcaccgccccgccgggggaaaccactgtcataccaatgaacagc
gttgaatttgaaagcaaaacagaggagaagaaagacgttgatgacttgacaaaagatggg
cctaaaccaatcttgccttacagttccatgttcatcttaagtcctacaaatccgattcgg
cgtctgttccactacatcgtcaacctgcgctatttcgagatggttatcctcattgtcata
gccctcagcagcattgccctggctgcagaagaccccgtccaagccgagtcaccaaggaat
gatgctctgaaatacttggattatatatttacgggcgtctttacctttgagatggtgatc
aagatgattgacttggggctattactccaccctggctcctacttccgtgacctgtggaat
atcctggacttcattgtggtcagtggggccttggtggcatttgccttctcaggaaccaaa
ggcaaggacatcaacaccatcaagtcgctgcgagttctgcgggtcctgaggccgctgaag
accattaaacggctgccaaaactcaaggctgtctttgactgcgtggtgaactccctgaag
aacgtcctcaatatcctcatagtttacatgctcttcatgttcatttttgctgtcattgct
gtgcagctcttcaaaggcagattcttctactgcacggatgagtcgaaggagctggagaag
gactgcaggggtcagtacctcgattacgaaaagaatgaggtggaggcgcagcccagggaa
tggaaaaaatacgagttccactacgacaacgtgctctgggctctgctgacgctcttcacc
gtctccacgggcgaagggtggcccaccgtgctgaagcactcagtggatgccacctacgag
gaacagggtcccagccctggctaccgaatggaaatgtctatcttttacgtggtgtatttt
gttgtcttcccttttttctttgtcaacatctttgtggcgttaatcatcatcaccttccaa
gagcaaggagataaagtgatgtcagagtgcagccttgagaaaaatgagagggcctgcata
gacttcgccataagtgccaagccgctgacccgctacatgcctcagaacaagcaatctttt
cagtacaagatgtggaaattcgtggtgtcccctccctttgagtattttatcatggtcatg
attgcactcaataccattgtcctaatgatgaagttctatgatgctccagaagcgtatgaa
gaaatgttgaaatgcctgaatattgtgttcacatccatgttctcaatggagtgtgtgctg
aagatcattgcctttggtgtgctgaattatttccgagatgcctggaatgtctttgatttt
gtaacagtgttgggaagtattactgatattttagtaacagagatcgcggacacggacaac
ttcatcaacctcagcttcctgcggctcttcagggcagcgagacttatcaagctccttcgc
cagggttacactatccgcatcttgctctggaccttcgtgcagtcttttaaggccttgcct
tatgtgtgtctcctcattgcgatgctcttcttcatctatgccattattggcatgcaggtg
tttggcaacatcgcactagatgatgaaacctccattaatcggcacaataacttccgtacc
ttcctccaagccctgatgcttctgttcaggagcgccacgggggaagcctggcacgagatc
atgctgtcctgcctcagcaacagagcctgcgacccgctctctggcctcaccaagaacgaa
tgcggcagcgattttgcctatttctacttcgtgtcgttcatcttcctctgctccttcctg
atgttgaacctctttgtggctgtgattatggacaactttgaatacctgacaagagactct
tccatccttgggccccatcatttggatgagtttgttcgcgtctgggctgaatatgaccct
gctgcctgttgccggattcattataaggatatgtacaatttgttacgtgtaattgctcca
cccctgggcttaggaaagaagtgcccgcatagggtggcatacaagcgcctggtgcggatg
aacatgccgatctcacctgaagatttaaccgtccacttcacgtccacgctgatggccctg
atccgcaccgcactggaaatcaaactggcctcagggggtgttaaacagcaccagtgtgac
gctgagttgagaaaggagatctcgctggtttggcccaatctgtcccagaagactctggat
ttgctggtgcctcctcacaaacccgatgagatgaccgtggggaaggtctacgcggcgctg
atgatatttgacttctacaagcagaacaagaacagcagggaacaagtccaccagcctgcg
gggggcctgtgccagcctggaccggtgtcgctcttccaccccctgaaggccactttggag
cagacccagccggcagcattcagcaacgccaaggcattcctccgccagaagagctcggcc
tcgctcaacaacgggggcgcgttgccagccccagagggggggatcaaagagtccagttct
tgggggacccaacgcacccaggatgtgttttatgaaaccagaacaccagctttcgaacga
ggccactcagaagaaatccccattgaacgggtggtagaaatgagggaaatcagccccaca
cttgccaacggagagcaccaaccaggcctggagagccaggggcgagcggcttccatgccg
cgcctggctgccgaaactcagaggagcaaagcacggtcacctgggagttacctagcaccc
attccggacacgagccccatgaaacgctccgtctccacgctgaccccgcagcggcctcac
cccatgcacctctacgagtactccttggagcgcatgccgcccgagcaagggcatcaccac
caccaccaccgctgccatcggcggaaagagaagaagcagaagtccttggacaggtccccc
catcagctggccgatggagaagctgtggcccagtctggtgagtcttcttctaaggacaag
aagcaggaacgcggccggtcccaagagaggaagcaacactcttcctcctcctccgaaaag
cagcgcttctactcctgcgaccgctacggcagccgggaccgttctcagcccaagtctgca
gatcagagcagacccacctcacccaacggaggcccagagcaaggtccacacagacagggc
agtggttcagttaatgggagccccttgctgtcgacatctggtgctagtaccccatgccgg
ggccggaggcagctcccacagactccactgaccccccgccccagcatcacttacaagacc
gctaactcctcgcccgtccacttcaccagtttccaaaccggccttcccactttctccccg
ggacgtctgagccgtggtttatccgagcacaacgcgctgctgcggggggaccagcagccc
gccccgccggcggtggcccgcatcggctccgacccctacctgggccaccgcgatgacggt
gacagcccctaccgcgccgtgccggaggacacgctcaccttcgaggaggcggtggccacc
aactcgggacgctcctcaaggacttcttacgtctcctccttgacctcccagtctcaccag
atccgcagggtgcccaacgggtaccactacacgctggggctcaacgcgggccccgggact
ggcaccagaggacgtagctactaccacgaagccgacgaggacgactggtgctag
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integrated database retrieval system
