Caloenas nicobarica (Nicobar pigeon): 135996552
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Entry
135996552 CDS
T11056
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cnic03000
]
135996552 (RC3H2)
04121 Ubiquitin system [BR:
cnic04121
]
135996552 (RC3H2)
Transcription factors [BR:
cnic03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
135996552 (RC3H2)
Ubiquitin system [BR:
cnic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135996552 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Phosducin
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4
zf_CCCH_4
MRC1
zf-CCCH_UNK
zf-C3HC4_4
Prok-RING_4
Xin
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
135996552
NCBI-ProteinID:
XP_065504706
LinkDB
All DBs
Position
19:complement(10283573..10317436)
Genome browser
AA seq
1436 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNVGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISATVRTFPLLNKVGVNSTVSTTTGNVISVI
GSPEATGKMVPSTNGIANLESGVPQLIPRCADTSLRALENTKKGGKAGANGQNVSGSPTE
SLPENKIGSPPKTPVSQAAATSAGPPNIGTEVNSVPPKSSPFVPRVPIYPPHSDNVQYFQ
DPRTQLSYEVPQYPQTGYYPPPPTVPAAVAPCVPRFVRSNNVPESSLPPASVPYADHYST
FPPRDRLNSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQMYPRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVACQPPSEQRTVPLPREPCGHLKSGYDEQLRRKPEQW
AQYHTQKTPLVSSALPMATPSPTPPSPLFSVDFGTEFSESVSDLSGTKFEEDHLSHYSPW
SCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRAKEEDPIIPFSDG
PIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVNAVDSRWSAYGSDST
SSARYAERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLD
EGSRLTLNLLSKEIDLRNGETDYTEDCADTKPDRDIELELSALDTDEPDGQGEQIEEILD
IQLGISSQDDQLLNGTTVENGHPLKQHQKESMEQKRQSLGVDRSLSLKDWKGIQDIMTAL
DDKLLGEKLQYYYSSSEGEDEDSEKEDKEGESTIPEGVGEVELCSDGSAVNTGPKGVIND
WRRFKQLETEQRQEQRREMERLIKKLSMTCRSHLDEETDKQKQKELQEKINGKMTLQEYN
MIHNDEDDEEFLQRYRKQRMEEMRQQLYSGQQFKQVFEIASGEAFLDTVDKEHKSTLIMI
HIYEDDIPGTESLNGCMICLATEYPTVKFCRVKSSLIGASARFTNNALPALLVYKAGELI
GNFVRITDQLGEDFFAVDLEAFLQECGLLPEKDLVLLTSIRNPSACYSEDSDLEID
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagaatttctgtcctgcccaatctgctacaacgag
tttgatgagaatgtgcacaaacccatcagcttaggctgctctcacactgtctgtaagacc
tgcctgaacaagcttcatcgcaaggcatgtcctttcgaccagactgccatcaacacagac
atcgatgtgcttcctgtcaactttgcactcctccagttagttggagcccaggtacctgat
catcagacagtgaagttgagtaatgtaggagagaacaaacattatgaagtagcaaagaaa
tgtgttgaggatttggcactctacttaaagccattaagtggaggaaaaggtgttgcaagc
ttgaatcagagtgcactgagccgcccgatgcaaaggaagctggtgacgctggtgaactgt
cagctggtggaggaggagggtcgggttcgagccatgagggcagctcgatccctgggcgag
agaactgtcacggagctgatcctgcagcaccaaaatcctcagcagctttctgccaacctt
tgggctgctgtcagggcacgaggatgccagtttctaggaccagctatgcaagaggaggca
ctgaaacttgtattactggcactggaagatggctctgcactctcgagaaaagttctggtg
ctttttgttgtacaaaggctagaaccaagatttcctcaggcctctaaaacgagcattggt
catgttgtgcagctactgtatagagcgtcatgctttaaggtcactaaaagggatgaagat
tcttctctgatgcagcttaaagaagagtttcggagttacgaggctttgcggagagaacat
gatgcccaaattgttcacattgccatggaagcaggacttcgaatatcaccagaacaatgg
tcttcccttctttatggtgacttggcacataaatcacacatgcaatccattatcgacaag
ctccaatctccagagtcttttgcaaagagtgtacaagaattgacaattgtcttgcagcgc
acaggagatcccgccaacctaaacaggctgaggcctcatttagagctcctggcaaacatc
gatccaaatccagatgcagcatctccaacatgggagcagctggaaaatgcaatggtcgct
gtaaagactgtggtacatgggctggtggatttcattcagaattacagtagaaaaggccat
gaaactccacagccacaaccgaatagcaaatataaaacaagtatgtgccgagaccttcgc
cagcaagggggatgtccaagaggaacaaactgtacgtttgctcattctcaggaagagctt
gaaaaatatcgcttgaggaacaaaaaaatcagtgcaacagtgagaacattcccccttcta
aataaagttggcgtaaacagcactgtctcaaccacaacaggaaacgttatttcggtcata
ggaagccctgaagcaacagggaagatggtgccaagtactaacggaatagctaatctagaa
agtggtgttccccagctgatccctcgctgtgcagacacctccctgagagctttggagaac
accaagaagggtgggaaggctggagccaatggccagaacgtttctggatcccctacagaa
tcactacctgaaaataaaattggttctccacccaagactcctgtaagccaggcagcagct
acctcagctggtcctcctaatattggaacagaagttaattctgtgcctccaaaatccagc
ccgtttgttcccagagttcctatctaccctccacattctgataatgttcaatatttccaa
gatcccaggactcagctgtcatatgaagttccacagtacccacagacaggatattatcca
ccacctccaacagtaccagctgctgtggctccctgtgttcctcgctttgtgaggtccaat
aacgttccagaatcctccctcccacctgcttccgtgccatatgccgatcattacagtaca
tttccccctcgagatcgactgaattctccttaccaacctcctcctccgcagccgtatgga
ccagttcctcctgtcccttctggaatgtatgctccagtttatgacagcaggcgcatctgg
cgcccacagatgtacccacgagatgatattattaggagcaattctttacctcccatggat
gtgatgcactcatctgtctatcagacatccttacgtgaaagatacaactctttggatggc
tattattctgtggcttgtcagcccccaagcgaacagaggactgtgcctttgccaagggag
ccttgtggtcatttgaagagtggttatgatgagcagttaagacggaagccggagcaatgg
gcacagtaccacacgcagaaaactcctctggtatcgtcagcccttccaatggcaacacca
tctccaacgccaccttctcctctcttcagcgtagacttcggaacagagttctcagagagc
gtcagtgatttgagtggaactaaatttgaggaagaccatctctctcactactcaccgtgg
tcttgtggcactatcggctcttgtataaacgctatcgactcagagcccaaggacgtgatt
gccaattcaaatgccgtgttaatggatttggacagcggagatgttaaaaggagagtgcat
ttatttgaaactcagagaagggcaaaggaagaagatcctataatcccatttagcgatgga
ccgatcatctccaagtggggtgcaatctccaggtcgtcccgcacaggttatcacacgaca
gatcctattcaggccactgcttcccaaggaagtgctactaaacccatcagcgtgtcagat
tatgtcccttatgtcaatgctgttgactcaagatggagtgcctatggctcagattctact
tcatcagcacgttatgcagaacgggacaggttcatagttacagacttgtctggtcacaga
aagcattccagcactggagatctgttgagtattgaattacagcaggccaaaagtaactca
ttattacttcagagagaggcgaatgcactagccatgcaacagaagtggaattctctggat
gaaggcagtcgtcttaccttaaatcttttaagcaaggaaattgatttgaggaatggtgag
accgattatacggaagactgtgcagacacaaagccagatcgagacattgaattggagctg
tcagcccttgatacagatgaacctgatgggcaaggcgaacaaatagaagagattctggat
atacagctaggtattagttctcaagatgatcagctgctcaatggaacaactgtagagaac
gggcatccgctcaagcagcaccagaaagaatctatggaacagaagagacaaagtttaggt
gtcgatagaagcttgtctctgaaagactggaaaggaatacaggacataatgactgctttg
gatgataaactgctgggtgagaagctccagtattactacagcagtagtgagggtgaggat
gaagacagcgagaaagaagataaagaaggggagagcaccattcccgagggcgttggggaa
gtagagctctgcagcgatggcagtgctgtcaacacaggtcccaaaggagtcattaatgac
tggcgaaggtttaaacaactggagactgaacagcggcaggagcagcgcagagaaatggag
cgacttataaaaaagttatctatgacatgtcgatctcacttagatgaagagactgataag
cagaagcagaaagagcttcaggaaaaaatcaatggaaagatgacattacaagaatataac
atgattcacaatgatgaagacgatgaggaatttttacagcgatacaggaagcagcgaatg
gaggagatgagacagcagttgtacagcgggcagcaatttaaacaggtttttgagattgcc
agtggagaagcgtttttggacacagttgataaagagcacaagagcacactgatcatgatc
catatttatgaagatgatatccccggcaccgagtccctgaacggctgtatgatctgcctg
gccactgagtatccaacagtgaaattttgccgagtaaagagttcactcattggtgccagc
gctcgctttactaataacgctctgccggctttgctggtctataaggcaggtgagctcatc
ggcaattttgtgcgaatcactgaccagctcggagaagatttttttgctgtagacctggag
gcttttctgcaagaatgtggtttgcttccagaaaaagacctagtgctcctgacttctata
cgtaatccgtctgcgtgttacagcgaggacagtgatctggaaatcgactga
DBGET
integrated database retrieval system
