Caloenas nicobarica (Nicobar pigeon): 135996584
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Entry
135996584 CDS
T11056
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135996584 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135996584 (NUP188)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
135996584 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
135996584
NCBI-ProteinID:
XP_065504768
LinkDB
All DBs
Position
19:6405810..6433566
Genome browser
AA seq
1737 aa
AA seq
DB search
MAAGGLCARSSRELWTILLGRSALREPAQIATELNKHWQRLLEGLSYYKPPSTTSAEKIK
ADKDVAAPLKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQALM
LKLADYYYEERICILRCVLHLLTYFQDERHPYTAQYFQCVEKLDKELVPNYRKQFEELYK
AEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMAPEELLAFAKMFKEQ
GFGTRQTNRHLVDESMDHLVDRIGYFSALILVEGMEIDSLHERALDDRTGEHKLANTERI
HQEMDNQLLQLGDVSHHAPVLLAWALLRHTINPEESANIIRRMGSTAIQLNVFQYLTKLL
RSLSSGGKNCTASTACMCIYGLLSFVLTSLELHTLGNQQDIIDAACEVLAASSIPQLFWK
TEPTAGLGIILDSVCGMFPHLLTPLLQLLQALVSDKSTAKKVYSFLDKMSFYIELYKHRP
PDVISHEDGTLWRRQAAKLLYPLALGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTL
FTCEIEMLLQVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLQRLT
TVISPPVDVIASCVNCLTVLAARMPAKVWTDLHHTGFLPFVANPVSSMNHMISAEGMNAG
GYGNLLMSIEQPQGEYSVTVSFLNLITTLVRGQLGSTQSQGLVPCIVFVLKEMLPNYHKW
RYNSHGVREKIGCLILQLIHAILNLCPEMDPCSSNGPSLQSLCVFSLANTEAGQAVINIM
SIGVDTIDMVMASQSSSDESQGQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALTQ
HGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLT
RLQSRIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQVVL
ELIDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGTLPP
PSESSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLKNFSTKKRFAYWSEYVKLLA
YHVAETEGSSCASVTEYQMLISAWRMLLIISTSHAEIMHLTDSAVHQQLFLDVLNGTKVL
LLVPMSVSCLQLGSMLCTLLLILLKQWKSELGSVDKIINSLTQILEGVLQADQQMMEKTK
AKVFSALITVLQMKEMKVNEIPQYSQLVLSVCETLQDEVIALFDQTRHSLTLGDATDDKD
SMETDDASRVKHKDQRDGVCVLGLHLAKELCEVDEDGDYWLQVTRKVPVLPTIFAALEIS
LRVKQNLHFTEASLHLLLTLARTQQGAAAVAGAGVTQSVCLPLLSVYQLSTNGTIQTSAS
SRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQSL
ACLEEADHTVGFILQLSNFTKEWHFHLPQLMRDMQVNLCYLCQACTSLLHSRKMLQHYLQ
TKNGDSLPSSVTPRVQRNPQASSKHPSPESEAAEQKALLTVQYSLLKILSKSLAALRHFT
PDVCQILLDQSLDLAEYNLLFVLSFTTPAFDSDVAPSFGTLLATVNVALNMLGELDKKKE
PFPQAAGLNMQEGTKTLKSLLMFTMENCFYLLISQAVRYLRDPAVHPRDKQRMKQELSSE
LSTLLSSLSRYFRRGGPSSPASGVLPSPQGKSASKLGPEGQEPLFQLVQAFVRHVQR
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggcgggctgtgcgcgaggagcagcagagaattatggacaattcttctgggc
agatcagctttaagagaaccagcacagattgcgacagaattgaacaagcactggcagaga
ttgttagagggtctttcatactataaaccgccaagtacaacttctgcagaaaaaataaaa
gctgataaagatgtagctgctccgctaaaagagttgggtctgagggtcagcaaatttttg
ggtctggatgaagagcagagtgtgcagctgttacagtgttatcttcaagaggattacaga
ggaacaagggactccctgaagacagttcttcaggatgaaaggcagagtcaggctctgatg
ctgaagcttgctgactattactacgaagagaggatctgcattttgcgctgcgtcctccat
ctactcacttattttcaggatgagaggcacccttacacagcacaatacttccagtgcgtc
gaaaagttggacaaggaattagttcctaattaccggaaacagtttgaagagctgtacaaa
gcagaagctcctacatgggaaacacatggaaatctcatgacagaacgtcaagtttcccgt
tggtttgtgcaatgcctccgcgaacagtccatgctcctggaagtcatcttcctctattat
gcgtactttgaaatggcacctgaggagcttctggcatttgccaagatgttcaaagaacag
ggatttggcactagacaaaccaacagacacttggtagatgagagcatggatcatctggtt
gaccgtatcggctactttagtgctcttattctggtggaaggcatggaaattgattccctc
catgagcgtgctctggatgacaggacgggggagcacaagttagcgaatactgagcgcatc
caccaggagatggacaatcagctgctgcagttaggggatgtctcgcatcacgctccggtg
cttttggcctgggctctgctccgtcataccataaacccagaggagtcagcaaacattatc
aggagaatgggcagcaccgctatccagctgaacgttttccagtatctgacaaagcttctg
cgatcgctgagcagtggggggaagaattgtacagccagcacggcatgtatgtgtatttat
ggacttctttcttttgtcctgacatcactggaattacatacgttgggcaatcagcaggat
ataattgatgctgcctgtgaagttctggcagcttccagcattcctcagctcttctggaag
acggaacccactgcgggtctgggtattatcctggacagtgtctgtgggatgttcccccat
ctacttactcctctccttcagctgcttcaagcccttgtgtctgataaatctactgcaaaa
aaggtatacagtttcctggataaaatgtccttctatatcgaactgtacaaacacagacct
cctgacgtgatctctcatgaagacggcacactttggcgaagacaggctgcaaagctcctc
tatcctcttgcactaggtcaaacaaatctgcggataccccagggaacagtgggccaagtg
atgctggatgatcgggcttatttggtacgatgggaatattcctacagcagctggacactg
ttcacctgcgagattgagatgctgctccaagttgtatcgacagcagatgtgattcagcat
tgccagagggtcaagccaataattgatctggttcataaggtcatcagcactgatgtatcg
atagcagattgccttctgccaatcacgtcgcgaatctacatgctcctgcagaggctaaca
actgtaatctctccccctgtggatgttattgcttcttgtgtcaattgtttgacagtactg
gctgctcggatgccagccaaggtttggactgaccttcaccacacagggttcttaccgttt
gttgccaatccagtgtccagtatgaatcacatgattagtgcagagggaatgaacgctggg
ggttatggaaacctgttgatgagcatagaacaacctcaaggcgagtacagtgttactgtc
tccttcctgaacctgatcacgactcttgttcggggacaacttggtagcacccagagccaa
ggacttgtcccttgcatcgtgtttgtcctgaaggagatgttaccaaattaccacaaatgg
cgttataactctcatggagtgagagagaaaattggatgccttattctgcagctgatccac
gctatactgaatttatgccccgaaatggatccttgcagcagcaatggccccagcctgcag
tccttgtgcgtcttcagcctggccaacacggaggccggacaagctgtcatcaacatcatg
agcatcggcgtggacactatcgatatggtgatggcctcgcagtccagcagtgatgagtca
caaggccaaggtcagctgctgatccagactgttaagctggcattctcagttaccaataat
gtcatccggttgaaacccccctccagcgtggtgtccccattagaacaggcgctcactcag
cacggtgctcacggaaacaatcttattgcggtcttggccaaatacatctaccacaagcat
gacccagcacttccacgcctagccatccagttgctcaaacgactggctacggttgctccc
atgtctgtttacgcctgcctcggtagcgacgctgccgccatccgcgacgccttcctcacc
cgcctgcagagcaggattgaggacatgcggattaaggtcatgatactggagttcctcacg
gttgcggtggagacacaacctgggctcattgagctgttcctgaacttggaagtgaaggat
ggcagtgacgggtcaaaggagttcagcttaggggagtggagttgcctccaagtagtcttg
gagctgatagactccaaacaacaggagaggtactggtgccctcccctcctgcatcgtgct
gccatcgccttcctgcacgcgctgtggcaggaccgtcgagacagcgccatgctggttctg
aggacaaagccaaagttctgggaaaatttaaccaatcccctttttgggacccttcctccg
ccttcagaatcgtcagagctcagcgtcttggatacctgtgccttaataatgaaaatcatc
tgtttggagatctactatgttgtcaagggctcactggatcagtccctgaaagacacactg
aagaatttctccaccaaaaagcgctttgcctactggtcagaatacgtgaagttactggcg
tatcacgtggcagagaccgaggggagcagctgtgcctccgtcaccgagtatcaaatgctc
atctcagcctggcggatgctgctgataatctctactagccatgcagaaataatgcatctg
actgattctgcagttcatcagcagttgttcctggatgtgctaaatgggaccaaggttttg
cttctagttcccatgtcagtgtcctgtctgcagctgggctctatgctgtgcacccttctt
ctcatcctgctcaaacagtggaagagcgagttgggttctgtggataaaatcataaactcc
ttgacgcagattctggagggagtgctacaggcagatcagcagatgatggagaaaaccaaa
gccaaagtgttctcagctcttatcactgtgctgcaaatgaaggagatgaaagtgaatgag
atcccccagtactcccagctggtgctgagtgtgtgtgaaacactccaagacgaggtcatt
gcgctttttgatcagacgcgacacagcctgactttgggagatgctacagatgacaaggac
agcatggagacggatgatgcctcccgagtgaaacacaaagaccagcgagatggggtgtgt
gttctgggtctgcatctggccaaagagctctgtgaagttgatgaagatggagactactgg
ctacaggtgaccaggaaagtccctgtgcttcccactatctttgccgcactggagatcagc
ctgagagttaaacaaaaccttcacttcacagaggcctcgttacatttactgctgacctta
gcgaggactcaacagggagcagcagcagtggctggagctggtgtcacacagagcgtctgc
ctgcccctcttgagcgtgtaccagctcagcactaacggaaccattcagacatccgcttca
tctcggaagtcgttggatgccccctcttggcctggggtctatcgtctctccatgtcgctg
atggaacgccttcttaaaacactcagatacaacttcctgacggaagcattggactttgtt
ggtgtccatcaagagaggattcttcagtgcctgaacgcagtacggacagtacagagcttg
gcctgtctggaagaggccgatcacaccgttggcttcattcttcagctctcaaatttcacc
aaggagtggcatttccacctgccgcagcttatgagggacatgcaggtgaatctgtgttat
ttgtgtcaggcctgtacctccctcctgcacagccgcaaaatgctccagcactacctgcag
acaaaaaatggcgattcccttccatcaagcgtgactccacgagtgcagcgtaacccccaa
gcctcctccaaacatcccagtcctgagtcagaggcagcggagcagaaggcgctgcttacg
gtgcagtacagcctcttgaaaatcctcagcaaatctcttgccgccctgcgccacttcacc
cctgatgtctgccagatcctcctggatcagtcactagaccttgctgagtacaacttgctc
ttcgttttgagtttcaccacaccagcctttgactcggatgtcgcaccttcctttgggacc
ctccttgccacagtcaacgtggcccttaacatgttgggagagctggataagaagaaggaa
cctttccctcaggctgcaggactgaatatgcaagagggaaccaaaaccctcaagtctctg
ctcatgtttacaatggaaaactgtttctacctgctcatctcccaggctgttcggtacttg
agagacccagctgtgcatccccgtgacaagcagcggatgaagcaagagctcagctctgag
ctgagtacgctgctctccagcctgtctcgttacttccgccgcggtggcccctcttcaccg
gccagcggggttcttccctctccccaaggaaaatctgcctccaagctgggtccggagggg
caggagcctttgtttcagctcgtgcaggcctttgtccggcatgtgcagagatag
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integrated database retrieval system
