Caloenas nicobarica (Nicobar pigeon): 135996735
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Entry
135996735 CDS
T11056
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04510
Focal adhesion
cnic04512
ECM-receptor interaction
cnic04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135996735 (TNR)
04518 Integrin signaling
135996735 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135996735 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cnic00536
]
135996735 (TNR)
Glycosaminoglycan binding proteins [BR:
cnic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135996735 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
EGF_Tenascin
Fn3_Dep-1_3rd
Pur_ac_phosph_N
Fn3_VIN3
Fn3_Dep-1_2nd
Interfer-bind
FN3_Tor_3rd
EGF_2
Fn3_R-PTP-O
Lzipper-MIP1
DUF1192
TSC22
Motif
Other DBs
NCBI-GeneID:
135996735
NCBI-ProteinID:
XP_065504988
LinkDB
All DBs
Position
20:complement(3975082..4005218)
Genome browser
AA seq
1355 aa
AA seq
DB search
MGTDSENPVLRNVLISFNLLLLGAVLKPFECRLEVTTEPAERPVVDEEGGLANCSPPIKE
QPMVFHHIYNINIPLDSCCSSMFKSSAEEVSSEDDRLAEYAEQTSDSESQVTFTHRINLP
KHACKCSTSLPSLQELLSRIEMLEREVSMLRDQCNSNCCQENAATGQLDYTPQCSGHGNF
SLESCSCVCMEGWAGSNCSEPRCPRGCSSRGVCLEGQCICDNDYGGEDCSQLRCPAGCGS
HGLCVDGECICEEGFAGEDCSQLRCPRDCSGKGQCVNGTCVCQEGYAGEDCGWLHCPNAC
SGRGLCQDGLCVCEDGYEGQDCSAVAPPENLRVTGISESSIELTWDSPGAATEYVVSYQP
AGPGGTQLQQRVPGDWSSITIAELEPGVAYNISVYAVIGNVLSIPVTSKVMTNLATPQGL
TFKTITETTAEVQWEPFSFPFDGWEISFIPKNNEGGVIAQLPSTVTTFNQTGLKPGEEYT
VTVVALKEQARSPPTSDSVSTLIDGPTQILVRDVSDTVAFVEWTPPRAKVDAILLKYGLA
DGEGGRTTFRLQPPLSQYSLQALRPGARYHLAVSAIRGANESRPALAQFTTEIDAPKNLR
VGSRTPASLELAWDNSEAEAHSYRVVYSTLAGEHYHEVLVPRDTGPTTRATLADLVPGTE
YGIGISAVMDSQQSVPATMNARTELDSPRDLLVTASTETSISLTWTRAAGPIDHYRITFT
PASGMASEVTVPRDKSQFTLSELEPGTEYTISIIAERGRQQSLEATVDAFTGVRPITQLH
FSQLTSSSVNVTWSDPSPPADRLVLTYSPRDEEEEQQLTLDGTRRHASLTGLQPSTEYLV
SLVATHGAISSEPVVGSITTGIDAPKDLRVGNVTQESMMVYWSPPIAAFDHYRISYRAAE
GKTESTTIASDATEYILHHLQPATKYEIEVKSVRGREESEMASITVYTAMDAPLGVTATN
ITPSEALLQWNPPLSDVESYILVLTRRAVAGETILVDGVNQEYQLTNLLPSTTYTVSMYA
TNGPLTSQTISTNFTTLLDPPTNLTASEVTRRSALLSWVPPVGEIENYIMTYRSTDGSRK
ELIVDAEDTWIRLEGLSETTEYTVRLQAAQNAMRSGFISTTFTTGGRVFANPQDCAQHLM
NGDTLSGVYTISINGDLGQRVQVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRIGFGN
LEDEFWLGLDNIHKITSQGRYELRIDMRDGQEAAYAYYDKFSIGDARSLYKLRIGDYNGT
SGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGINW
YHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggggactgacagtgaaaaccctgtcctgaggaacgtgctcatcagcttcaacttgctt
ttgctgggtgccgtcctcaagccttttgagtgccggctggaggtgacaacagagccggcc
gagaggccggtggtggacgaggagggtggccttgccaactgcagcccacccatcaaagag
cagcccatggtcttccaccacatctacaacatcaacatccccctggacagctgctgctca
tccatgttcaagtcttcagccgaggaggtgagttcagaagacgaccggctggctgagtac
gcggagcagacctctgacagcgagagccaggtcaccttcacccacaggataaacttgccc
aagcacgcctgcaagtgctccacctccctcccgtccctgcaggagctgctgagcaggatt
gagatgctggagagggaggtctccatgctccgggaccaatgcaactccaattgctgccaa
gaaaatgcagccacagggcagctggattacaccccgcagtgcagcggccacgggaacttc
agcctggagtcctgcagctgcgtctgcatggagggctgggcgggcagcaactgctccgag
ccccgctgcccccggggctgctccagccgtggcgtctgcctggagggccagtgcatctgt
gacaacgactacgggggcgaggattgctcccagctccgctgccccgctggctgcggctcc
cacgggctctgcgtggacggggaatgcatctgcgaggagggttttgccggagaggactgc
tcccagctgcggtgtccccgcgactgctcggggaaaggacagtgcgtcaacggcacgtgc
gtctgccaggagggctacgccggggaggactgcgggtggctgcactgccccaacgcctgc
agcggccgcgggctctgccaggacgggctctgcgtctgcgaggacggctacgaagggcag
gactgctcagcagtggctcctcccgaaaacctgcgagtgacggggatcagcgagagctcc
attgagctgacgtgggacagccccggggcagccaccgagtacgttgtctcgtaccagccg
gcggggccagggggcacccagctccagcagcgggtgcctggggactggagcagcatcacc
atcgcggagctggagccaggagttgcgtacaacatcagcgtctacgcggtcatcggcaat
gtcttgagcatccctgttacctccaaggtgatgaccaacctcgccacgccgcaggggctg
acgttcaagaccatcacggagacgacggcggaggtgcagtgggagcctttctccttcccc
tttgacggctgggagatcagcttcatccccaagaataacgagggtggcgtgatcgcccag
ctccccagcaccgtcaccaccttcaaccagacagggctgaagccgggggaagagtacacc
gtcaccgtggtggccctgaaggaacaagccaggagccctcccacctccgacagcgtctca
accctcatcgacggcccgacgcagatcctggtgcgggacgtctccgacacggtggccttc
gtggagtggacgccgccgcgcgccaaggtggacgccatcctgctgaagtacgggctggcg
gacggggagggggggaggaccacgttccgcctgcagccccccctcagccagtactccctg
caggccctgcgccccggcgcccgctaccacctcgccgtcagcgccatccggggtgccaac
gagagccggccggccctggcccagttcaccacagaaatcgatgcccccaagaacctgcgg
gtgggctcgcggacgcccgccagcctcgagctggcctgggacaacagcgaggccgaggcg
cacagctacagggtggtctacagcaccctggccggggagcactaccacgaagtcctggtg
ccacgggacaccggtcccacaacccgggccaccctcgcagatctggtgccggggacagag
tacggcattgggatttcggccgtgatggacagccagcagagcgtgccagcaaccatgaat
gccaggaccgagcttgacagcccccgggacctcctggtgacagcctccacggagacatcc
atctcgctgacctggaccagagcagcaggtcccattgaccactaccgcattaccttcacc
cccgcctcggggatggcgtctgaagtgacggtgccccgggacaagtcgcagttcaccctc
tcagagctggagcccgggacagaatacaccatttccatcatcgccgagaggggacgccag
cagagcctggaggccaccgtggatgccttcacaggggtccggcccatcacgcagctccac
ttctcccagctgacgtcctccagcgtgaacgtcacgtggagcgatccatccccaccagca
gaccgcctcgtcctcacctacagcccccgggatgaggaggaggaacagcagctcacgctc
gacggcacccgcaggcacgccagcctgacaggcttgcagccgtccaccgagtacctggtg
tcactggtggccacgcatggtgccatcagctccgagcctgtcgtgggctccatcacgaca
gggatcgacgcaccgaaggacctcagggtgggcaatgtcacccaggagtccatgatggtc
tactggagccctcccatcgctgcctttgaccactatagaatatcctaccgtgccgctgaa
gggaagacagagagcaccaccatcgccagcgatgccaccgagtacatcctccaccacctg
cagcctgccaccaagtacgagatcgaggtgaagagcgtgcggggccgtgaggagagcgag
atggcctccatcactgtgtacacagccatggatgcccctctgggggtcacagccaccaac
atcaccccctccgaggcgctgctgcagtggaacccaccgctgtcagacgtggagagctac
atcctcgtcctcacccgccgtgcagttgcaggagaaactattcttgtggatggagtcaac
caggagtaccagttgaccaacctcctgcccagtaccacctacacagtctctatgtatgcc
accaatgggcccctcaccagccagaccatcagcaccaactttacaactcttttggatcct
ccaacaaacctgaccgccagcgaagtgactcgacggagcgccctgctctcctgggtgcct
cccgtgggagagatcgagaactacatcatgacctacagatccactgacggcagccgcaag
gagctgattgtggatgctgaggacacatggatccgcctggaggggctttctgagaccaca
gagtacacggtgcgcctgcaagctgcccaaaacgccatgcggagcggcttcatctccacc
accttcaccacaggtggccgtgtctttgctaaccctcaggactgtgcccagcacctgatg
aacggagacacactgagcggcgtctacaccatctccatcaacggggaccttggccagcgg
gtgcaggtgtactgtgacatgaccaccgacgggggcggctggattgtcttccagaggcgg
cagaatgggctgaccgatttcttccggaagtgggcagattatcggattggcttcggaaac
ttggaggacgaattttggctgggcttggacaacatccacaagatcacatcccaagggcgc
tacgagttgcgaatagacatgagggatggtcaggaagcagcatatgcctactatgacaag
ttctccatcggtgacgcccggagcttgtacaagctgcgaatcggggactacaacggcact
tcaggggactccctcacctaccaccagggccgccccttctccaccaaggacagggacaac
gatgtcgctgtgaccaactgcgccatgtcctacaaaggggcctggtggtacaagaactgc
caccgcaccaacctcaacggcaagtacggagagtcccggcacagtcaggggattaactgg
taccattggaaaggccacgagttctccatcccgttcgtggaaatgaagatgcgaccttac
aaccaccgtaacatctctgggaggaagcgacggtccttacagctctga
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