Caloenas nicobarica (Nicobar pigeon): 135996845
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Entry
135996845 CDS
T11056
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cnic03000
]
135996845 (RC3H1)
04121 Ubiquitin system [BR:
cnic04121
]
135996845 (RC3H1)
Transcription factors [BR:
cnic03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
135996845 (RC3H1)
Ubiquitin system [BR:
cnic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135996845 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
135996845
NCBI-ProteinID:
XP_065505180
LinkDB
All DBs
Position
20:3194914..3257159
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AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IDLLPVNSALLQLVGAQVPEQQPVTLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTPALPNGIVSTGSTVTQLISRGTDSSYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPTRAPADLPSVSVAKQLHMVPRGSQLYNTPQADMFYQDPRGA
APPFEPAPYQQGVYYPTQSMSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSPQYTQPQQY
PPMGQPIYPPHYDSRRVYPPVQPYQREEMVRGSPVPIEIPPAAVPPYVPESRDRYQQTEG
YCPVAPHLGQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKAMRDQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMPAMAVQG
ATTKSIISDYNPYGTHSGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAERE
QQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPAPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMESQSSLDIKNKLGTTKQTENGQLEPQSKAPAEDLALTFS
SDVPNGSALTQENIGLLSNKTASLSLSEDLEGGGDNQDSQRAGVSPVSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaacaattcggaagcccatcagcttgggttgcggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgtccctttgaccagaccactatcaacacagac
attgacctcctgcctgtgaattcagccttgctgcaactagtgggtgctcaggttcctgag
cagcagccagttactttatgtagtggagctgaagacaccaagcattatgaggagggcaag
aaatgtgtggaagaattagcattgtacctcaaaccactcagcagcgcaagaggtgtgggt
cttaacagtactactcagagcgtgctaagtcgtcccatgcaaaggaagcttgtgacgtta
gttcattgccagctagtggaggaagaagggcggatcagagccatgcgtgcagcgcggtcg
ctcggtgaaagaacggtcacagagctcatccttcagcatcaaaatcctcagcagctctcc
tccaacctctgggctgcggtgagagccagaggatgccagttccttggaccagcaatgcaa
gaggaggctttaaagcttgttctgctggctctggaagatggatctgctttatcacggaaa
gtcttggttctctttgtggttcagaggctggagccgcgatttcctcaggcttctaaaaca
agcattgggcacgtcgtccaacttctttacagagcctcgtgcttcaaggtgacaaagcga
gatgaggattcctccctgatgcaactgaaggaggaatttcggacttatgaagctctgaga
agggaacatgattcccagatagttcaaattgctatggaagcaggtctacgcattgcacca
gatcagtggtcctcgctgttatatggggaccaatctcacaaatcccacatgcagtctatt
attgacaagttgcagaccccggcctcgtttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaatctgaatcgtcttcgacctcacctagagctcctg
gcaaatatcgatcccagtccagatgccccacctccaacatgggaacaactggaaaatgga
ctagttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaag
aaaggaacagatcagcaacagcctcctcagcacagcaagtacaagacatacatgtgccga
gacatgaaacagcgaggaggatgcccccgaggtgccagctgcaccttcgcacattcgcag
gaggagctggaaaaattccgtaaaatgaacaagcgtctggttcccagaagacccctgagc
gcctccctgggccagctgaacgaggtgggcctgccttcaggagctatcctctcggaggaa
gggggagtggacctgcccaataggaaaactcctgctctgccaaatggaattgtgtcaaca
ggcagcacggtgacccaactaatttctcgagggactgactccagttatgaaacagctctg
aagccggggaagatggaccatctgagtagcagtgcccctggatccccccctgacttgctg
gaatctgtccccaagagctctatttctgccttaccggtcaaccctcatcctgtgcccact
cgggcaccagcagatctgccttcagtgtctgtcgccaagcagctgcacatggtaccccga
gggtctcagctgtataacactccgcaagcagatatgttttatcaagatcctagaggagct
gccccaccgtttgagccagcaccctaccaacaaggagtttactatcccactcagtccatg
tctcgttttgtccgacctcctccatcagctcctgaacctgggccaccttatttagaccat
tacccaccctaccttcaggatcgtgtggtgagcccccagtacacgcagccgcagcagtac
cctcctatgggacagcccatatatccaccgcactacgacagccgtcgcgtgtatcccccg
gtccagccgtatcagcgagaggagatggtgcgaggaagccctgtgcccatcgaaataccg
ccagcggccgtacctccctacgtacccgaatccagagacagataccagcaaacagagggg
tattgcccagtggcgccgcatctcggtcagatcagaccttcatgccacaggcctcatccc
agcctggacgaacttcaccgacgaaggaaagagatcatggcccagctagaagagaggaag
gtgatttctccacctccttttgcaccatcaccaactttgcctcacccctttcattctgag
gagatttttgtttttgtacagtacttggatgaagacctgaaggtagctgggaaatacaaa
ggaaacgactatagccaatactctccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgttgtggcagcaaggagtgtggagatggcgaacgtg
gatagtaaagccatgcgtgaccagcgattagacatgcagagaagggcggcagagactggt
gacgatgacctcattccatttggagaccggccaactgtgtcgagatttggggccatctct
cgtacttccaaagcgatgtaccagaattcaggtcccatgccggccatggcggttcaggga
gctaccaccaaatcaatcatttcagactacaatccttatggaactcacagtggctgggga
ggctctccatattctcctcatcaaaatataccttctcagggacgtttcaatgacagggag
agactgtccatgtcagatgtggctggtcatgggaaacagttgccctcagctgaacgagaa
cagcagctgcgcatggagctgcagcaagtagaccatcagattagccagcagacgcaaatg
cgaggactagaggctgttagtaacaggctgctgttgcagagggaggcgactaccctggca
ggccaaccacagcccccagccccacctcccaagtggcctgggatgatctcaagtgagcag
ctgagcttggagctacaccaagtggaaagggaaattgggaagagaacccgggagctgagc
atggagagtcagtcttcactggatataaaaaacaaactgggcaccactaaacagacagaa
aatggacaattagagccccaaagcaaggctccagctgaggacctcgcactgacattcagc
agcgacgttccgaatggatcagccttgacacaagagaacattggcctcctgtcgaacaag
acggcgtctctcagcctgtcggaggacctggagggaggaggagacaaccaggactcccag
agagcgggagtttcacccgtgtctgctccatga
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