Caloenas nicobarica (Nicobar pigeon): 135997056
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Entry
135997056 CDS
T11056
Symbol
DDX20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnic03041
]
135997056 (DDX20)
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135997056 (DDX20)
Spliceosome [BR:
cnic03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
135997056 (DDX20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
AAA_30
SiaC
CMS1
Motif
Other DBs
NCBI-GeneID:
135997056
NCBI-ProteinID:
XP_065505526
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All DBs
Position
21:4032581..4043626
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AA seq
761 aa
AA seq
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MAAPSEGRFRTRDVLVPGGPSDFGSLLLSAPVLAGLEAAGFHRPSPVQLKAIPLGRCGLD
LIVQAKSGTGKTCVFSTIALDAVLLESPATQILILAPTREIAVQIHAVITAIGIKMEGLE
CHVFIGGTPLNQDKIRLKKCHIAVGSPGRIKQLIELDYLNTASIRLFILDEADKLLEEGS
FQEQINWIYSSLPANKQMLAVSATYPESLANALTRYMRDPTFVRLNPTDPSLIGLKQYYK
IVNSHPLPHKTFEEKTQHLQDLFSKIPFNQALVFSNLHSRAQHLAEILTSRGFPAECISG
SMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVINLDVPVDWETYMHRIGRAG
RFGTLGLAVTYCCRGEEENMMMKIAQKCNLQLLPLPEPVPPGMMDQFEDGEVEIKPVMHT
SVNSDTVRLRPEEPGLQPLQNSFPEVPEPHSNLPADNSSVERPKKALKQKQIKKCTDSAN
RAKGHRNLQTSSCHTEQRSQVKTVSRMDGQHNTRSPEEEDLKKNLPRIPCLSSFKNHQNN
PWSFSGFVEDYEYFIKEGSEREVEILRSYSGPGEQRELPKNGGVEWKELEHNTEMVTNGG
VSSDNDGSYSSRASSKSREDNSCFEMFSDAQEKNAVPTARQGHAGFCSTPEEPQEPSRVP
KQNQAKKKVLKQNAKQKKSRCRQSPSPSTRKPEDDCSCSSWDDGVPDGAWSYKNYWKSYY
QAWQNYYAAVSHYRRSYRQFNWVNAYHVNSVYLQELLKSGD
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaccgagcgagggccggttccgtacacgggacgtgttggtgcccggcggcccg
tccgacttcgggtcgttgctgctgtcggcgccggtgctggcggggttggaggcggccggg
ttccacaggccgtcgccggtgcagctgaaggcgatcccgctggggcgctgcgggctggat
ctcatcgtgcaggccaagtccggcactggcaaaacctgcgtgttctccaccatcgccctg
gacgcggtgttgctggagagcccggccacgcagatactgatcttggctcctacgcgtgag
attgctgtgcagattcatgctgtgatcacagctattggaatcaaaatggaaggcttggaa
tgccacgtcttcattggcgggactcctctgaaccaggacaaaatcagactaaagaagtgc
cacatagcagttggctccccaggtcgaataaaacagctcatagagctggactacttgaac
acagccagtatccggcttttcattctggatgaagcagacaagctgttagaagaaggcagc
tttcaggaacaaatcaattggatttactcttcactaccagccaataagcagatgctcgct
gtttcagccacttacccggaatcattagcgaacgctttgaccaggtacatgagagaccca
acatttgtgaggttgaaccctactgatccaagtctcattgggctgaagcagtattacaaa
atcgtgaattcccatccgcttccgcataaaacatttgaggaaaaaacccagcacctacag
gacttgttcagcaagattccatttaatcaagccttagtcttctcaaatttgcatagcagg
gctcaacatctggctgaaatcctgacgtcgagaggttttcctgccgagtgcatttcaggc
agcatgaatcagaatcagcgtcttgatgctatggctaaattaaagcaattccactgcaga
gttttgatttccacagacttgacatctcgtggaattgacgctgaaaaagtgaatctggtt
atcaacctggacgtccctgtggactgggagacatacatgcaccgcatcggcagagctgga
cgcttcggaactttaggcttagccgtgacgtactgctgccgcggagaggaagaaaacatg
atgatgaaaattgctcagaagtgtaaccttcagcttcttcctctaccagagcctgtaccc
cctggaatgatggatcagtttgaagatggggaggtagaaatcaaacctgttatgcatact
tcagtgaattctgacactgtgcgtttgagaccagaggaaccaggactgcagcctctccaa
aacagttttccagaggtacctgagcctcattctaatcttccagctgataattcttctgta
gaaaggccaaaaaaagctctgaagcaaaagcagataaagaagtgcacagattctgcgaat
agagcaaaaggtcacagaaacctccaaacttccagttgccacacagaacagaggagtcaa
gtcaaaactgtctctagaatggatggacaacataacactcggtctccagaagaggaggac
ttgaaaaaaaatcttcccagaattccatgcttgtcttctttcaaaaaccaccagaacaat
ccctggagcttctcgggctttgttgaagactatgagtatttcattaaagaagggtcagag
agagaggttgaaattttaagaagctattcaggcccaggagaacagcgtgagctccccaaa
aatggtggtgtggagtggaaggagctggaacataatacagagatggtcacaaatggtggt
gtgtccagtgacaacgatgggtcatacagttcccgggcttcctccaagagcagggaggat
aactcgtgctttgaaatgttttcagatgcacaggagaagaatgctgttcccacagcgcgt
cagggtcacgcaggcttctgttcgacaccagaggagcctcaggagccgtcacgagtccca
aagcaaaatcaagcgaaaaagaaagttctgaaacaaaacgctaaacaaaagaaaagccgg
tgccgtcagtcccctagtccttccacgagaaaaccagaagatgactgttcctgcagctca
tgggatgatggtgttccagatggggcttggagttacaaaaactactggaaatcatattat
caagcgtggcaaaactactacgctgcggtgtctcactacaggagaagttacagacagttt
aactgggtgaacgcctatcacgtcaactcggtctatcttcaggagttgctgaaaagcggg
gattga
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