Caloenas nicobarica (Nicobar pigeon): 135997156
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Entry
135997156 CDS
T11056
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
KO
K10802
high mobility group protein B1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03410
Base excision repair
cnic04140
Autophagy - animal
cnic04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
135997156 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135997156 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
135997156 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cnic03036
]
135997156 (HMGB1)
03400 DNA repair and recombination proteins [BR:
cnic03400
]
135997156 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cnic04147
]
135997156 (HMGB1)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
135997156 (HMGB1)
DNA repair and recombination proteins [BR:
cnic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
135997156 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
135997156 (HMGB1)
Exosome [BR:
cnic04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
135997156 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
RNA_pol_3_Rpc31
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
135997156
NCBI-ProteinID:
XP_065505708
LinkDB
All DBs
Position
1:192147138..192158089
Genome browser
AA seq
215 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKF
EDMAKADKLRYEKEMKNYVPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKVDAGKKVVAKAEK
SKKKKEEEEDEDEDEEEEDDEEEEEEEDEDDDDDE
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggcgatcccaagaagccgagaggtaaaatgtcttcatacgccttctttgtg
caaacctgccgggaggagcacaagaagaaacatccagatgcttcagtgaacttttcagag
ttctcaaaaaaatgctcagaacggtggaagactatgtcttctaaggagaagggaaagttt
gaagatatggcaaaggctgacaagcttcgttatgaaaaagaaatgaaaaactatgtacca
cctaagggggaaacaaaaaagaagttcaaggatccaaatgcacctaagaggcctccttcg
gcttttttcttgttttgctctgagtttcgtccaaaaatcaaaggagaacatcctggtctt
tccatcggcgatgtcgcaaagaagctgggagagatgtggaacaacacggctgcagatgat
aaacagccttatgaaaagaaggctgccaaactgaaggagaagtatgaaaaggatattgct
gcataccgggccaaagggaaggttgatgcaggcaaaaaagtagttgccaaagctgagaag
agcaagaagaagaaggaggaggaggaagatgaggacgaagatgaagaggaggaagatgat
gaagaagaggaagaggaggaggatgaagatgatgatgatgatgaataa
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integrated database retrieval system
