Caloenas nicobarica (Nicobar pigeon): 135997313
Help
Entry
135997313 CDS
T11056
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cnic03036
]
135997313 (CHD5)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
135997313 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_CHD1_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
135997313
NCBI-ProteinID:
XP_065505864
LinkDB
All DBs
Position
22:complement(7380651..7404242)
Genome browser
AA seq
1949 aa
AA seq
DB search
MRGPALLEDAENEEDVSEEDDVVLEGLDEFFAEEQVAVQKKKKSKKLKDSKAAKIKRRKK
EGSNDDMSDNEEEIEEKSESEGSDYSPNKKKKKKLKDKKEKKPKRKKDEEEDDNEDGGLK
EPKSSAQLMEEWGLDDVDYIFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLG
AKWREFSANNPFKGSSAAAAAAAVAAAVETVSIAPGLAASPQPSPLPTVVRKAKTKEGKG
PGVRKKIKGSKDGKKKGKGKKMAGLKFRFGGIPSKRKKGSSSEEEEREESDFDSASINSS
SVRSECSSGLGKRGKRRRKKKRIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVC
LDPELEKAPEGRWSCPHCEKEGIQWEPKEEEEEEEEGGEEEEDDHMEFCRVCKDGGELLC
CDTCPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWAWKEPPAAPLPPALG
SPDAELPLPPPKAPGGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMD
EPPAFDYGSGDEDSQREKRKNKDPQYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGDVH
YLIKWKDLPYDQCTWEIDDIDIPYYENLKQLYWNHRELMLGEDTRPLKKLNKKGKKLKEE
KLEKPPERPLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGL
GKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSV
IRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLVVDEA
HRLKNNQSKFFRVLNCYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA
DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE
ALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLMLL
QKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAP
GAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV
TRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGTV
SQGQRIAVPDAVTPFSDTLSTKGGAATPGMKKKHGGTPPGDNKDVDDSSVIHYDDAAISK
LLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKLL
RHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDELSDNQSEYSIGSEDEDEDFE
ERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQ
DAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRI
GVMSLVRKKVQEFEHVNGKYSTPDLVLEGLESKKSMEMVSSDSTTPVPASPAYTQAGPPA
LADKPETQLGFQEEKEQGEHVSRKASDSQVPASAEKGESEEHPESCDSKEKPREEKQEES
EKAEPSPEPLLKDERIPEKEGPLEKAELNSSTGKGEDKEVKAEDAKAEETEHSEAQQNGD
REDDEDGKKDDRSVNFRFMFNIADGGFTELHTLWQNEERAAISSGKIYDIWHRRHDYWLL
AGIVTHGYARWQDIQNDPRYVILNEPFKSEVHKGNYLEMKNKFLARRFKLLEQALVIEEQ
LRRAAYLNMTQDPSHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLE
ELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLATRGGDPATQQGSFGSSQIYNS
NFGPNFRGPGPGGIVNYSQMPLGPYVTDI
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atgcgggggccggcgctgctggaggacgcggagaacgaggaggacgtctcggaagaagac
gatgtggtgctggaaggactggatgagttttttgcagaagagcaagtggccgtgcagaaa
aaaaagaaatccaagaagctgaaagacagcaaggctgccaaaatcaagaggaggaagaag
gaggggagcaatgatgacatgtcagacaacgaagaggagatcgaggagaaatctgagagc
gaagggagtgactattcacccaacaaaaagaagaagaaaaaactgaaggacaagaaggag
aaaaagccgaaacggaagaaggatgaagaggaggatgacaatgaggatggagggctgaag
gagcccaagagctcagcccagctgatggaggagtggggcctggatgacgtggattacatt
ttctcagaagaggattatcatactcttactaattacaaggctttcagccagtttctcagg
cccttgatcgccaagaagaaccccaagatccccatgtccaagatgatgaccgtgcttggc
gccaagtggcgagagttcagcgccaataacccgttcaagggcagctcggcagctgccgca
gccgcggctgttgctgctgcggtggagaccgtcagcatcgcgcccgggctggccgccagc
ccccagccgtcccccctgcccaccgttgtcaggaaggccaagaccaaggagggcaagggt
ccaggcgtgcggaagaaaatcaagggctccaaagatgggaagaaaaaggggaaggggaaa
aagatggcaggcttgaaattccggtttggaggaatccccagcaaaaggaaaaagggctcc
tctagtgaagaggaggaacgggaggaatccgacttcgacagcgccagcatcaacagctcg
tcagtgcgctccgagtgctcgtctggcctggggaagagagggaagaggaggagaaagaaa
aagaggattgaagagggggatggctacgagacagaccaccaggactactgcgaggtgtgc
cagcagggaggggagatcatcctgtgcgacacctgtccccgcgcctaccacctggtgtgc
ctggacccggagctggagaaggcccccgagggcaggtggagctgcccccactgcgagaag
gagggcatccagtgggagccgaaggaggaggaggaggaggaggaggaaggcggcgaggag
gaggaggatgaccacatggagttctgccgggtctgtaaggatggcggggagctgctgtgc
tgcgacacctgcccgtcctcctaccacctgcactgcctgaacccgccactgccagagatc
cccaacggggagtggctctgccctcgctgtacgtgccctccactgaagggcaaagtccaa
cgcatcctgcactgggcctggaaggagccgccggccgcccccctcccgcccgcgctgggg
tccccggacgcggagctgcctctgcccccgcccaaggcgccgggggggatcccggagcgc
gagttcttcgtgaaatgggcaggtctgtcctactggcactgctcctgggtcaaggagctg
cagctggagctctaccacaccgtcatgtaccgcaactaccaacgcaagaacgacatggat
gagccgccggccttcgactacggctctggggacgaggacagccagcgggagaagcgcaag
aacaaagacccgcagtacgccaagatggaggagcggttctaccgctacggtatcaagccc
gagtggatgatgatccaccgcatcctgaaccacagctttgacaaaaagggagacgtccat
tacctgatcaagtggaaggacctgccgtacgaccagtgcacctgggagatcgacgacata
gacatcccgtactacgagaacctcaagcagctctactggaaccacagggagctgatgctg
ggggaggacacgcgcccgctgaagaagctgaacaagaaagggaaaaagctgaaagaggag
aagctagaaaagcccccagaaaggcctctggtggatcccacagtgaagttcgacaagcag
ccgtggtacatcgatgccacgggagggacgctccacccgtaccagctggaagggctgaac
tggctgaggttttcctgggcccaagggacagatacgatcctggctgacgagatggggctg
gggaagacggtgcagactatcgtgttcttgtattccctgtacaaggagggccactcgaaa
gggccgtacctggtcagcgcccctctctccaccatcatcaactgggagcgtgagtttgag
atgtgggcacccgacttctacgtcgtcacctacacgggggacaaagaaagccgctccgtc
atccgggaaaacgagttttcttttgaggacaacgccatccgcagtggaaagaaagttttc
cggatgaagaaggaagcccagatcaagttccacgtcctgctcacctcctacgagctgatc
accattgaccaggcggtgctgggctccatcgagtgggcctgtctggtggtggatgaggcg
cacaggctgaagaacaaccagtccaaattcttcagagtattaaactgctacaagatcgat
tacaagctgctgctcaccgggactccgctccagaacaacctggaagagctcttccacctg
ctcaacttcctgactcccgagaggtttaataacctggaggggttcctggaggagtttgcc
gacatctccaaggaggaccagatcaaaaagctccatgatctgctgggtccccacatgctg
cggcggctcaaggccgatgtgttcaagaacatgccggccaagacggagctgatcgtgcgg
gtggagctgagccagatgcagaagaagtactacaagttcatcctgacaaggaatttcgaa
gccctgaactcaaaaggtggtgggaaccaggtctcgctactcaacatcatgatggacctg
aagaagtgctgcaaccacccgtatctcttcccagtggcggctgtggaggccccagttctg
cccaacggatcctacgatgggaattctttggtcaaatcttctgggaaactgatgctgctc
caaaagatgctgaagaagttacgggatgggggtcacagagttctgatcttctctcagatg
acgaagatgctggacttgctggaggatttcctggagtatgaaggctacaagtacgagcgg
atcgacgggggcatcaccggcggcctgcgccaggaggccatcgacaggtttaacgctcct
ggtgctcagcagttctgctttctcctctctacccgtgccggcggtctgggcataaacctt
gctacggccgacacagtcattatttatgattctgactggaatccccacaatgacatccag
gctttcagcagagctcaccgcatcgggcagaacaagaaggtgatgatctaccgcttcgtg
accagagcctccgtggaggagcgcatcacccaggtggccaagcggaagatgatgctcacg
cacctcgtggtgcgcccggggctgggctccaagtcgggctccatgaccaagcaggagctg
gacgacatcctcaagtttgggacagaagagctgttcaaggacgatgtggaaggcacagtg
tcccaaggacagcgcatcgctgtgccagatgctgtcacccctttctctgataccctgtca
accaaagggggtgcagcgactcccggcatgaaaaagaagcatggtggtacccccccaggt
gacaataaggatgtggatgacagcagcgtgatccactacgacgacgctgccatctctaag
cttctggaccggaaccaggatgcgactgatgacacggagctgcagaatatgaacgagtat
ctcagctcctttaaagtggcccagtatgttgtgagagaagaggacggtgtggaagaggtg
gaacgtgagatcatcaagcaagaggagaacgtggaccctgactattgggagaagctgctg
cggcaccactatgagcagcagcaggaagatctggccaggaacctggggaaagggaagagg
atccgcaagcaggtcaactacaacgacacctcacaggaggaccaagagtggcaggacgag
ctctctgacaaccagtccgagtactccatcggctccgaggacgaggacgaagactttgaa
gagaggccagaaggtcagagtggcaggagacaatcccggcggcagctgaagagtgaccgg
gacaagccgctccctcctctgctggcgagagttggggggaacatcgaggtcctcggcttc
aacgcgcggcagcgcaaggcgttcctgaacgccatcatgcgctgggggatgccgccccag
gacgccttcaactcccactggctggtgcgggacctgcgtgggaagagcgagaaggaattc
agggcctacgtctccctcttcatgagacatttgtgtgaacccggcgcagacggtgctgaa
acctttgcggacggcgttccccgggaaggactgtcccggcagcacgtgctgacccgcata
ggagtcatgtcactagtaaggaagaaggtccaggagttcgagcatgtcaacgggaagtac
agcaccccagacctggttctcgagggcctggagagcaagaagtccatggagatggtgtct
tcagactccaccacccctgtccccgccagccccgcgtacacgcaggcgggacccccggcc
ctggcagacaaaccagaaacgcaactcgggttccaggaggagaaggagcaaggggagcac
gtgtccaggaaggcgtccgacagccaggtgcctgcgagtgccgagaagggggaaagcgaa
gagcacccagagagctgtgacagcaaggagaaaccgagggaggagaagcaagaggagagt
gaaaaggctgagccttctcccgagcccctgctgaaagacgagaggattccggagaaggag
gggcctttggagaaggcggagctgaacagcagcacagggaagggggaggacaaagaagtc
aaagcagaagatgccaaggcggaggagacggagcacagcgaggctcagcaaaatggggac
agagaggatgacgaggatggaaagaaggatgacagaagtgtgaacttccgattcatgttc
aacattgcagatggtggttttacagagctgcacacgctgtggcagaacgaggagcgggct
gccatctcctccggcaagatctacgacatctggcaccggcgacacgactactggctgttg
gcaggaattgtcactcacggctacgcccgctggcaggacatccagaacgacccgcggtac
gtgatcctgaacgagcccttcaagtcggaggtgcacaaggggaactacctcgagatgaag
aacaagttcctcgcccggcggttcaagttgctggagcaggccctggtgatcgaggagcag
ctgcggcgggcagcgtacctcaacatgacccaagaccccagtcaccccgccatggccctg
aacgcgcggctggctgaagtggagtgccttgccgagagccaccagcacctctccaaagag
tccctggccggcaacaagcccgcgaacgccgtcctgcacaaggtgctgaaccagctcgag
gagctgctgagcgacatgaaggccgacgtgacgcgcctgccctccatgctgtcccgcatc
ccgcccgtggccgcccggctgcagatgtcggagcggagcatcctcagccgcctggccacc
cgcggcggggacccggccacccagcagggctccttcggctcctcccagatctacaacagc
aactttgggccaaacttccgaggtcccgggccaggcgggattgtcaactacagccagatg
cctctgggaccgtacgtgactgatatttag
DBGET
integrated database retrieval system
