Caloenas nicobarica (Nicobar pigeon): 135997628
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Entry
135997628 CDS
T11056
Symbol
SFPQ
Name
(RefSeq) splicing factor, proline- and glutamine-rich isoform X1
KO
K13219
splicing factor, proline- and glutamine-rich
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cnic01009
]
135997628 (SFPQ)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnic03021
]
135997628 (SFPQ)
03041 Spliceosome [BR:
cnic03041
]
135997628 (SFPQ)
Protein phosphatases and associated proteins [BR:
cnic01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135997628 (SFPQ)
Transcription machinery [BR:
cnic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135997628 (SFPQ)
Spliceosome [BR:
cnic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
135997628 (SFPQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
NOPS
RRM_7
Motif
Other DBs
NCBI-GeneID:
135997628
NCBI-ProteinID:
XP_065506430
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All DBs
Position
23:3699414..3713908
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AA seq
646 aa
AA seq
DB search
MSRDRFRSRGGGGGGFHRRGGGGGRGGPNHDFRSPPPGMGMGQNRGPMGGGPQGPGGPPG
GGPKPEPPKPPASTSAPPSSSSSAASTTAGAAGSQAGPGAPPSSALPAGQPPQQQQAPVS
TPSSTPSGPGGQPQPKPSPSPTPAGGPKKGQGQSPSGGPKGPGGPQQGTGGLHKGGPGHR
GGPGGEPRGRGQQHQGQQSLSSQQGSAGGEKLSDEGFKANLSLLRRPGEKTYTQRCRLFV
GNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGRQ
LRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPVERAVVIVDDRGRSTGKGIVEFASK
PAARKAFERCTEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFA
QPGSFEFEYSQRWKSLDEMEKQQREQVAKNMKDAKDKLESEMEDAYHEHQANLLRQDLMR
RQEELRRMEELHNQEMQKRKEIQLRQEEERRRREEEMMIRQREMEEQMRRQREENYSRMG
YMDPRERDMRMGGATTMNMGDPYASAAQKFPPLGGGGGIGYEANPGVGQAAMSGSMMGSD
MRPERFGQGGAGPVGGQGPRGMGPGTPTGYGRGREEYEGPNKKPRF
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgggatcggttccgtagtcgtggcggcggcggaggcggcttccaccggcgcggc
ggtggcggtggccgcggcggccccaaccacgatttccgctctccgccgcccggcatgggc
atgggccagaaccgcggccccatgggaggcggcccgcagggcccgggcggcccgccgggc
ggaggcccgaagcccgagcctccgaagccgcccgcgtcgacatctgctccgccttcctcg
tcctcttcagccgcctccaccacggcgggggccgccggcagccaggcgggccctggagcg
cctccatcctccgcgctgcccgccgggcagccgccgcagcagcagcaggccccggtgtcg
acgccttcttcgactccctccggtccgggtgggcagccgcagcccaaaccgagccccagc
cccaccccggccggcggccctaagaaaggacaaggacagtcgcccagcggcgggcccaaa
ggaccgggagggccccagcaggggaccggagggctgcacaagggcgggccggggcaccgc
ggcgggccgggcggagagccgcggggccgcgggcagcagcaccagggccagcagagcctc
tcctcgcagcagggctcggccggcggcgagaagctctcggacgagggatttaaagcgaac
ctctctctgctgaggcggcccggggagaagacttatactcagcgttgccgcttgtttgtt
gggaatttgcctgctgatataacagacgaggactttaaaagactgttcgccaaatatggg
gagccaggagaggtttttatcaacaagggcaaaggctttggattcattaaattggaatct
agagctcttgcagaaattgcaaaggcagaactggatgatacccccatgaggggtcgacag
ctccgtgttcggtttgccacacacgctgctgcgctctcagtgcggaacctttcgccctat
gtgtccaacgagttgctggaggaagctttttcccagtttggtccagtggaaagagctgtt
gtgattgtagatgatcgaggtagatcaacagggaaaggcattgttgaatttgcatcaaag
ccagctgcaagaaaagcatttgaacggtgtactgaaggagtgtttttgttgacaaccact
cctaggccagttattgtggaaccattggagcagctggatgatgaagatggtcttccagaa
aagcttgctcagaagaatccaatgtatcaaaaggaaagagagactcctccccgttttgct
cagcctggcagttttgaatttgaatattcccagaggtggaaatctttagatgaaatggaa
aaacagcagagagagcaagtggcaaaaaacatgaaagatgccaaagataaactcgagagt
gagatggaagatgcttatcacgagcatcaggcaaacctcttgcgtcaagaccttatgagg
cgtcaggaagaactgaggcggatggaagaactccataatcaagaaatgcagaaacgcaaa
gaaattcaactgaggcaggaggaggagcggcgcaggcgggaagaggaaatgatgattcgt
cagcgggagatggaagaacaaatgagaagacagagggaagagaattacagtagaatgggt
tacatggatccaagggagagagacatgagaatgggtggtgccaccacaatgaacatggga
gatccttatgcttctgcagcccagaaatttccgcctctcggaggtggaggcggcataggt
tatgaagctaatccaggagttggccaagcagccatgagtggttctatgatgggaagtgac
atgcgtcctgaacgctttgggcagggaggtgcggggcctgtgggtggccagggtcctaga
ggaatggggcctggaacaccaacaggatatggtagagggagagaagaatatgaaggccca
aacaaaaagccccgattttag
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