Caloenas nicobarica (Nicobar pigeon): 135998228
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Entry
135998228 CDS
T11056
Symbol
DHX58
Name
(RefSeq) ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
135998228 (DHX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cnic04054
]
135998228 (DHX58)
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135998228 (DHX58)
Pattern recognition receptors [BR:
cnic04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
135998228 (DHX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_11
AAA_22
TTRAP
Motif
Other DBs
NCBI-GeneID:
135998228
NCBI-ProteinID:
XP_065507457
LinkDB
All DBs
Position
24:3996137..4000436
Genome browser
AA seq
685 aa
AA seq
DB search
MRTGPGSSRSGMELRGYQREVVTPALRGHNSIIWLPTGAGKTRAAVHVCRQHLESRRGGR
VAVLVNKVHLVEQHAKKEFNVLQKDFRVTAISGDSSEKSFFASVVKRSDVVICTAQILQN
ALVSGEEDMHVELTDFSLLVIDECHHTHKEAVYNKIMLNYLQRKLCGQQDLPQVLGLTAS
PGTGGATSFEGAVEHILQICANLDTEKITSAQEELEQLQTHVPQPRKQYDLCQERAQDPF
GERLKKVMEQIQQYMEMPALPRDFGTQIYEQRIVEVEKRAAETFCRKTRVCALHLRKYND
ALLINDTVRMIDAFQCLQQFYATERDTKDPTEQFLTATFEENRTSLQAFAGDRRYENPRL
GKLEQILREHFQPLGTSRGIVFTKTRQSAHSLLSWLQDTAALCGEHIRAAVLTGAGYSNQ
TRHMTQNEQQDVIKLFREGALNLLFSTSVAEEGLDIPECNIVVRYGLMTNEIAMMQARGR
ARAENSVYSVLAKANSREVSRELLNEDLVELMERAIRAVQAMPEREYRLKITELQRVAVA
SWLMKKARIGERRQLHDPDAVYLYCVNCNTAVCRGSDLRTVEGMHHINVNPNFGLYYRVS
SGKIEFQRTFKDWEPGCRISCSECSQDWGMEMIYKQVKLPMLCIKNFVVETPAEKRRYKK
WSAVTFPVKEFDYVEYCSSTHGLSF
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccggccccggcagcagcaggagcgggatggagctgcgggggtaccagcgggaa
gtggtgaccccggccctgcgtggccacaacagcatcatctggttgcccacgggcgccggc
aagacccgcgctgccgtccacgtctgccggcagcacctggagagccggcggggtggcagg
gtggccgtgctggtcaacaaggtgcacttggtggagcaacatgccaagaaggagttcaac
gtgctgcagaaggacttcagggtgacggccatcagcggggacagcagcgagaagtccttc
ttcgcctccgtggtgaagcggagcgacgttgtcatctgcacagcccagatcctgcagaac
gcgctggtcagcggggaggaggacatgcacgtggagctgacggatttctcgctgctggtg
atagatgagtgccaccacacgcacaaggaagccgtctacaacaaaatcatgctgaattac
ctccagcgcaagctctgtgggcagcaggacctgccgcaggtcctgggcctgacagcgtcc
cctggcaccgggggggcaacttcctttgagggggctgtagagcacatcttgcagatctgt
gccaacctggacaccgagaagatcacgtcggcacaggaggagttggagcagctgcagacc
cacgtcccccagcccaggaagcagtacgacctgtgccaggagagagcacaggaccccttt
ggcgagcggttgaagaaggtaatggagcagatccagcagtacatggagatgcccgccctg
ccgcgggacttcggcacgcagatttacgagcagcgcatcgtggaggtggagaagagagcg
gcggagacgttttgccgcaagacgcgggtgtgcgcgctgcacctgcgcaagtacaacgac
gctttgctgatcaacgacacggtgcggatgatcgacgccttccagtgcctccagcagttc
tatgccaccgagagggacacgaaggacccaactgaacagttcctcaccgccacgtttgag
gagaacaggacgagcctgcaggcgtttgctggggaccggcgctatgagaatcccaggctg
ggcaaactggagcagatcctgcgggagcatttccagcccctgggtacttctcgtggcatc
gtcttcaccaagacccggcagagcgcccacagcctgctcagctggctgcaggacacggcc
gcgctctgcggggagcacatcagggctgccgtcctcaccggcgccggctacagcaaccag
accaggcacatgacgcagaatgagcagcaggatgtgatcaagctgttccgagagggagcc
ctcaacctgctcttctccaccagtgtggccgaggagggcctggatatccctgagtgcaac
atcgtggtccgctatgggctgatgaccaacgagatcgccatgatgcaggcccggggccgt
gcccgtgccgagaacagcgtctactcggtcctcgccaaagccaacagcagagaggtctcc
cgggagctgctcaacgaggacctggtggagctgatggagagggcgatccgagcggtgcaa
gccatgcccgagcgggaataccgcctcaagatcacggagctgcagcgagtcgccgtggcc
agctggctgatgaagaaggccaggatcggtgagaggcggcagctgcacgaccccgacgcc
gtttacctctactgtgtcaactgcaacacggcggtgtgccgcggcagcgacctccgcacc
gtggagggcatgcaccacattaacgtcaaccccaacttcgggctgtattacagagtttcc
tctgggaaaatagaattccagcggactttcaaggactgggagcccggctgccgcatctcg
tgcagtgagtgcagccaggactggggaatggagatgatctacaagcaggtgaagctgcct
atgctctgcatcaaaaacttcgtggtggagacaccagctgagaagaggaggtacaagaag
tggagtgctgtgacattccctgtcaaggagtttgactacgtggagtactgctccagcacc
cacggcctgtccttctag
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