Caloenas nicobarica (Nicobar pigeon): 135998410
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Entry
135998410 CDS
T11056
Symbol
USP39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135998410 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnic03041
]
135998410 (USP39)
Spliceosome [BR:
cnic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
135998410 (USP39)
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
135998410
NCBI-ProteinID:
XP_065507662
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Position
25:1873954..1879859
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AA seq
590 aa
AA seq
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MSSRGKREREPRAAPRGGGSSSSSSSAARGSSRSRRDGDTERSRGRREAERERGRREAAE
PGQALPLPVDPARIKREPGTGTGSSGGSAAPAGPVRVKREREPDGDSDPEPEPTVRYGRF
DPEDQRSRHCPYLDTINKSVLDFDFEKLCSISLSHINVYACLVCGKYFQGRGLKSHAYIH
SVQLSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTAQQIANLDRQAKLSRAY
DGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEENYGQIQRPPGDVMFLLVQ
RFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKNFQITKQGDGVEFLSWFLNALHSALG
GTKRKKKTIVTDVFQGSMRIFTKKLPHPDLPAEEKAQLLQNAEYQEMMVESTFMYLTLDL
PTAPLYKDEKEQLIIPQVPLFSILAKFNGVTEKEYKTYKENFLKRFQLTKLPPYLIFCIK
RFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAAHANTTYDLIANIVHDGKPSEGSYR
IHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRREEDETNQQGA
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagccgcgggaaacgggagcgggagccccgggcggccccgcggggcggcggctcc
tcctcctcctcctcctcagcagcgcggggatcgtcgcggagccgccgggacggggacacg
gagcgttcccgggggcggcgggaggcggagcgggagcgcgggcggcgggaggcggcggag
ccgggccaggccctcccgctgccggtggatcccgcgcggatcaagcgggagccggggacc
gggaccggctcctccgggggttccgccgcccccgccggccccgtgcgggtgaaacgggag
cgggagcctgatggcgactccgacccggagcccgagcccaccgtgcgctacgggcggttt
gacccggaggaccagcgcagccgccactgcccctacctggacaccatcaacaagagcgtc
ctggacttcgactttgagaagctctgctccatctcgctgtcccacatcaacgtctacgcc
tgcttggtctgcgggaagtacttccagggccgcgggctgaagtcccacgcctacatccac
agcgtccagctcagccaccatgtcttcctcaacctgcacaccctcaagttctactgcctg
cctgacaactacgagatcattgactcctcgctggaggacatcacgtacgtgctgaagccg
acgttcacggcgcagcagatcgccaacctggaccggcaggccaagctgtcccgcgcctac
gacggcaccacgtacctgcccggcatcgtggggctcaacaacatcaaagccaacgactac
gccaacgctgtgctgcaggccttgtccaacgtcccgccgctgcggaattattttttggag
gaggagaattacgggcagatccagcgcccgcccggggacgtgatgttcctgctggtgcag
cggttcggggagctcatgcggaagctctggaacccgcggaatttcaaagcccacgtctcg
ccccacgagatgctgcaggccgtggtgctctgcagcaagaagaacttccagatcaccaag
caaggggatggggtggaattcctgtcctggttcctcaacgcgctgcactcggctctgggc
ggcaccaagaggaagaagaagaccatcgtcaccgacgtcttccagggctccatgcgcatc
ttcaccaagaagctgcctcacccggatctgccggccgaggagaaggcgcagctcctgcag
aacgccgagtaccaggagatgatggtggaatccaccttcatgtacctgacgctggacctg
cccaccgccccgctctacaaggacgagaaggagcagctcatcatcccccaggtccccctc
ttcagcatcttggccaagttcaacggcgtcaccgagaaggagtacaagacctacaaggag
aacttcctcaagcgcttccagctcaccaagctgccgccctacctcatcttctgcatcaag
cgcttcaccaagaacaacttctttgtggagaagaaccccaccatcgtcaacttccccatc
acgaacgtggacctgcgcgagtacctgtcggaggaggtgcaggccgcccacgccaacacc
acctacgacctgatcgccaacatcgtgcacgacgggaaaccctccgagggctcctaccgc
atccacgtgctgcaccatggcaccgggaagtggtacgagctgcaggacctgcaggtcacc
gacatcctgccccagatgatcaccctctcggaggcctacatccagatctggaagcgccgc
gaggaggacgagacgaaccaacaaggtgcttaa
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