KEGG   Caloenas nicobarica (Nicobar pigeon): 135998996
Entry
135998996         CDS       T11056                                 
Symbol
KDM4B
Name
(RefSeq) lysine-specific demethylase 4B isoform X1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
cnic  Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:cnic00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cnic03036]
    135998996 (KDM4B)
Enzymes [BR:cnic01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     135998996 (KDM4B)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     135998996 (KDM4B)
Chromosome and associated proteins [BR:cnic03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    135998996 (KDM4B)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD DUF7141 DUF4537
Other DBs
NCBI-GeneID: 135998996
NCBI-ProteinID: XP_065508426
LinkDB
Position
27:complement(3881258..3960718)
AA seq 1108 aa
MGSENPSPQNPGCKIMTFRPTLEEFRDFGKYIAYMESQGAHRAGLAKVIPPKEWKPRKTY
DDIDDMIIPAPIQQVVTGQSGLFTQYNIQKKPMTVGEYRRLANSEKYCTPRHQDFEDLER
KYWKNLTFVSPIYGADISGSLYDADVEEWNIGNLNTLLDMVEHECGIIIEGVNTPYLYFG
MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAKGFFPGSSQGCDAFLR
HKMTLISPSILKKYGIPFDRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY
GKMATQCTCRKDTVKISMDVFVRVLQPERYDLWKQGKDIAVLDHMKPTALSSPELDAWNE
TKAELKAKLLRRIGDEEEDTKHRSHRKRSQPRRHKTEDQKSLGDVMAIETALEDVKVKEE
LKRGPELEEEERSKGTEGEGDCKAKARPPKVKSERKKKHLFHQHQHHLPAPQPPPLPPQQ
LAEDEAPAARPPVPPAAPASSAAQKNLPPAPLNVVQPSEAPVEDDDFKSRPIIPMLYVVP
RTKKVAFDKERMSCQQAFEQFATQKSPSWQEQTVPMEIPVKDEENAEAENTEVATEVSDS
QTAAAFSKMKMKIKKSRRHPLGKPPARSPLSVVKQETSSDEETFPFSGEEDMSDPEALKS
LLSLQWKNKAHNFPAERKFNAAAALSEPYCAVCTLFYPYNQSLQMDKEAVPASGGEPSSF
VHLSKCGQKTKPLIPEMCFTSSGENTEPLPSNSYLGEDGTSPLISCAKCCLQVHASCYGI
RPDLVNESWSCSRCSANAWAAECCLCNLRGGALQMTTDGRWVHLICAIAVPEARFLNVIE
RHPVDISAIPEQRWKLKCVYCRKRMKRVAGACIQCSDELCSTSFHVTCAHAAGVPMEPDD
WPYVVSITCFKHKAANQNIPFRREVTLGQTVITKNRNGLYYRCKVIGMTTQTFYEVNFDD
GSYSDNVYPESIISRDCVQLGPPLEGELVQLQWTDGIVYKAKFIAAQISHIYQVEFEDGS
QLMVKRGDIYTLEEELPKRVKSRLVGIESLSTGAPQEDVFSGDEVRAKRPRLGNSRNPEE
YGQNPDYLAFMESLLQTQYQPGTQSNMF
NT seq 3327 nt   +upstreamnt  +downstreamnt
atggggtcggaaaacccaagcccgcagaaccctggctgtaagattatgacctttcgtccc
accctggaggaattccgggactttgggaaatacatcgcgtacatggaatcgcaaggcgct
caccgagcagggctggccaaggtgattcctcccaaggaatggaagccccgaaaaacctac
gatgacatagatgacatgattatcccagctcctattcagcaggtggttactggccagtcg
gggttgttcacccagtataatatacagaagaagccgatgactgtgggagaataccggcgt
ctggctaacagtgagaagtattgtactccacgccatcaagattttgaagacttggagcgc
aagtactggaagaatctcacatttgtctcaccaatttatggagccgatatcagtggctca
ctatatgatgcagatgtggaagaatggaatattggcaacctgaacaccctcttggacatg
gtggaacacgagtgtggcattatcatagaaggtgtcaacactccctacctctactttggg
atgtggaagacaacgtttgcttggcataccgaggacatggatctgtacagcatcaactac
ttgcattttggggagccaaaatcctggtacgccatccccccggaacacggcaagaggctg
gagcgcctggcgaaaggtttttttccaggaagctctcagggctgcgacgctttcctccgc
cacaagatgaccctcatttcgccctcgatcctgaagaagtacggcattcctttcgaccgg
atcacccaggaagccggagagttcatgattacatttccctatggttaccacgccggcttc
aatcacggcttcaactgcgccgagtccaccaattttgccactttgcgatggattgactac
ggaaaaatggcaacacagtgtacgtgccgcaaagacacggtgaagatttccatggacgtc
tttgtgcgggttctgcaaccggaacgttacgatttatggaaacaaggcaaagacattgct
gtcctggaccacatgaaacccacagctctgagcagcccagaactggatgcctggaatgag
accaaggcagagttgaaggcgaaattgcttcgcaggataggagacgaggaagaggacacc
aaacaccggtctcaccgaaaaaggagtcaacccagaagacataaaacggaggatcagaag
tctcttggggatgtcatggcgattgaaactgccttggaagatgtgaaagtaaaagaggag
ctgaaaagggggccggagctggaggaagaggagagaagcaaagggaccgagggagaaggt
gactgcaaagcaaaggcccgtcccccgaaagtaaaaagtgagaggaagaagaagcacctt
ttccatcaacaccaacaccacctgccagcaccgcagcctcccccgctgcccccgcagcag
ctggcagaggacgaggcgccagcggcgcggccaccggtgcccccagcagcccccgcatcc
tccgcagcacaaaagaacctgcccccagcgcccctgaacgtcgtccagccctcggaggcg
ccggttgaagatgacgacttcaaatctcggcccatcattcccatgctttacgtggttccg
cggaccaaaaaggtggcgtttgacaaggagcgcatgtcctgccagcaggccttcgagcag
ttcgccacgcagaagagtcccagctggcaggagcagacggtcccgatggaaatcccagtg
aaggatgaggagaacgcagaagcagaaaatacagaggtcgctacagaggtcagtgattca
cagactgctgctgctttttcaaaaatgaagatgaagataaaaaagagtcgtcgtcaccca
ctgggcaaaccaccagcccgctccccgctgtcagtggttaaacaggagacctcgagtgat
gaggaaacatttccattttctggggaggaagatatgagtgacccagaggctctgaaatct
ttactttccctccagtggaagaataaagcgcataatttcccagctgaaagaaaattcaac
gcagccgctgcgctgagcgagccgtactgcgctgtctgtaccctgttctacccctacaac
cagtccttacagatggataaggaagctgtcccggcctcgggaggggagcccagctctttc
gtccacctttccaagtgcggacagaagaccaagcccctgatccccgagatgtgctttacc
tcaagtggagagaacacagagccccttccttccaattcctaccttggggaggatggaacc
agccccttgatatcctgtgccaaatgctgcctgcaggttcatgctagctgttacggaatt
cgtccagacttggtgaatgaaagctggtcttgctcacggtgctcagccaacgcgtgggca
gcggaatgttgcctgtgcaatctcaggggaggagctctgcagatgaccacggacgggcgg
tgggtccatctaatctgtgctatcgctgtccccgaggcccgttttctcaatgtaatagag
cgtcatcctgtggacatcagtgctattccggagcagaggtggaaactgaaatgcgtgtac
tgccgcaagcggatgaagcgggtggcgggcgcctgcatccagtgctcggacgagctctgc
tccacgtccttccacgtcacctgcgcgcacgcggccggcgtgcccatggagcccgacgac
tggccctacgtcgtgtccatcacctgcttcaagcacaaagctgctaaccagaatattccg
tttcgaagagaggtgaccctcggacagacagtgatcacaaagaatcggaatgggctctac
taccgatgtaaagtgattggcatgacaacacagactttctatgaagtgaactttgacgat
ggttcatacagcgacaacgtttacccagaaagcattatcagcagagactgcgtccagctg
gggccccctctggagggagagctggtccagctgcagtggacggatggaatcgtctataag
gccaagtttattgcagcccagatcagtcacatttaccaggtcgagtttgaagatggttcc
caactcatggtaaaacgtggggatatttataccttggaagaagagcttcccaagagagtg
aagtctcgcctggtgggtatcgagtccctcagcactggggcccctcaggaagatgtattt
tcgggagatgaagtgagagccaagcgtccccggctggggaattcaagaaatcccgaagaa
tacggacaaaacccagattacttggcctttatggagagcctcttgcagacacagtaccag
cctggaactcagagcaacatgttttaa

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