Caloenas nicobarica (Nicobar pigeon): 135999018
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Entry
135999018 CDS
T11056
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03013
Nucleocytoplasmic transport
cnic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135999018 (UPF1)
03015 mRNA surveillance pathway
135999018 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135999018 (UPF1)
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135999018 (UPF1)
5.6.2.5 RNA 5'-3' helicase
135999018 (UPF1)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135999018 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
135999018 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
135999018
NCBI-ProteinID:
XP_065508482
LinkDB
All DBs
Position
27:complement(2744232..2763294)
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AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIETQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagttgctcggcgccgacacgcagggctccgagttcgagttcaccgactttactctg
cccagccagacccaaacgccgcccgggcccgggcaggcggggccgggacagggccagggg
ccccccggagcggggcagggaccgccaggaccgatcgaaacacaggtgaacggacctgat
ggcattctgcagaacggagctgtggatgataacgtggcaaaaaccagccagctcctggca
gagctgaattttgaagaagatgaagaagacacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccccgcttgtgtggtttactgtaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacatcgttaatcatcttgtg
agagccaagtgcaaagaggtgactctccataaagatggacctttaggagaaaccgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggtggttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttctcagtggcagcctctcatccaagatcgctgtttcctttcgtgg
ctggtaaagattccatctgaacaggagcagctgagagcacgtcagattacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggacttggaa
aagcctggcgttgatgaagaaccacagcatgtcctgctgagatacgaagatgcttatcaa
taccaaaatatatttggtcctctagtgaagctcgaggcagactatgacaagaaactcaag
gagtctcagacccaggacaacatcactgtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtataaaggagacctggcccctttatggaaaggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcgcctgtggaagttactcacaacttccaagtggattttgtctggaagtctact
tcgtttgacaggatgcagagtgctttaaaaacatttgctgtggatgagacttcggtgtct
gggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtcccccgggtactggaaaa
acagtgacatcagccaccatcgtctatcatctggctagacagggcaatgggcctgtgtta
gtctgtgctcccagtaacatagctgtggatcagttgactgagaagatccaccagactgga
ctgaaagtggttcgtctgtgcgctaaaagtcgtgaggcaattgactctcctgtgtccttc
ttggctttgcataaccagatcagaaacatggatagcatgccagagcttcagaaattgcaa
cagcttaaagatgaaactggagaactgtcatctgctgatgaaaaacgttaccgtgcactg
aaacgaacagcagagcgggaattacttatgaatgcagatgtgatctgttgtacgtgtgtg
ggagctggtgatccaagacttgcaaaaatgcagttccgctccatcctgattgatgaaagc
acacaggccaccgagccggagtgcatggtgcccgttgtcctgggagcaaaacagctgatt
cttgttggtgaccactgccagctgggtcccgttgtgatgtgtaaaaaagctgccaaggcc
gggctgtctcagtcgctctttgagcggctggtggtgctggggatccggccgatccgcctg
caggtgcagtaccgcatgcaccccgcactcagcgccttcccctccaacatcttctacgag
ggatcactccagaatggtgtcactgcagcggaccgtgtgaagaaaggttttgatttccag
tggccccagccagataagccgatgtttttctatgttacacaaggacaagaagaaattgcc
agttcaggcacctcttacttaaacaggacggaagctgccaatgtggagaagatcactaca
aagctcctgaaggctggtgccaaaccagatcagattggcattattacaccttacgaaggt
caacgatcctatctggtgcagtacatgcagttcagtggttccttgcacacgaagctctac
caggaagtggaaattgcgagtgtggatgccttccagggacgagagaaggactttattatc
ctttcttgtgtgagggccaacgaacaccaaggaatagggtttctgaatgaccccaggcgt
cttaatgtagctctcacaagagcaaggtacggtgtaattattgttgggaacccaaaagcg
ctgtctaaacaacccctgtggaatcacctgctgaactactacaaggagcagaaggttctg
gtggagggaccactgaacaacctccgggaaagcctcatgcagttcagcaagccccgcaaa
cttgtcaacaccatcaaccccggtgcccgtttcatgactactgccatgtatgatgcacgg
gaggcgattattccagggtctgtctatgaccggagcagccaagggcgcccgtccaacatg
tactttcaaacccacgaccagatcgggatgatcagcgctggccccagccacgtcaccgcc
atgaacattcccatccccttcaacctcgtcatgccgccgatgccgccaccgggatacttc
ggccaggctaacggaccagctgcaggacgtggggctccaaaaggaaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaactagtcagtcgaaccttccgaacagc
caagcgagccaagacgtggtgtcccagccgttctcgcagggccccctgactcagggttac
atctccatgagtcagccctcgcagatgagtcagcccgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcgtatcaacacggcggagtgacgggactgtcacagtat
tag
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integrated database retrieval system
