Caloenas nicobarica (Nicobar pigeon): 135999516
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Entry
135999516 CDS
T11056
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03013
Nucleocytoplasmic transport
cnic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135999516 (UPF2)
03015 mRNA surveillance pathway
135999516 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135999516 (UPF2)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135999516 (UPF2)
mRNA cycle factors
P-body specific factors
135999516 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
135999516
NCBI-ProteinID:
XP_065509162
LinkDB
All DBs
Position
1:complement(7179496..7237773)
Genome browser
AA seq
1271 aa
AA seq
DB search
MPAERKKPANMEEKESSLNNKEKEFSERRPVSTREKPKEDVKVGIKRESLKVPEDKKKKV
EEDKRKKEDKERKKKEEDKVKAEEEQKKKDEEEKKKLEEEEKKKQEEEEKKKQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPLLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSGKDESRDSKDAKDNKEAPGSEDLELELENLDINDDPLELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAIRQVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPSLAGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaaatatggaagaaaaagaatcttcattaaataac
aaagaaaaagaatttagcgaaaggcgaccagtgagcaccagggagaagccaaaagaagat
gtcaaggttggcattaagagagagagtttaaaggttcctgaagataaaaagaaaaaagtg
gaagaggataaaagaaaaaaagaagacaaggagcggaagaaaaaagaagaggataaagta
aaggcagaagaagagcaaaagaagaaagacgaagaagaaaagaagaaacttgaagaagag
gagaaaaagaaacaagaggaagaagagaaaaagaaacaagaagaagcagctgctcaattg
aaagaaaaagaggaagcacatcagctccatcaggaggcttgggaacgccatcaggcgaga
aaagagcttcgcagcaaaaaccagaatgcaccagacaatcgccctgaggaaaacttcttc
agcagactagattccagtctgaagaagaacactgcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccacgactttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaagccaaactgaaaatatcagatgtgaactgc
gctgtgcacttgtgttccctctttcaccagcgctatgctgattttgctcctttgttactt
caggcttggaaaaaacattttgaagcaaggaaagaagagaagactcccaacattaccaag
ttgagaactgatttgcgtttcattgcagaattgacaatagttggaattttcactgacaag
gaaggtctgtctttaatctatgagcagcttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagacgacattgctggt
ttggtaccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaagaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgaattcttcactccaaaggagaactgagtgaagatcgacacaagcaatatgaggaa
tttgcaatgtcatatcagaagctgttggcaaattctcaatctctagctgatcttttggat
gaaaatatgcctgaccttccccaagagaaaccaacacctgaggaacatggacctggtatt
gatattttcacaccaggaaagcctggagaatatgacctggaggggggtatctgggaagat
gaagatgctagaaacttctatgagaatctcatcgacttaaaggcttttgtgccagcaatt
ttatttaaagacaatgaaaaatgttcccagaacaaggattccggcaaagatgaatcaaga
gattccaaagatgccaaggataacaaggaagcacctgggagtgaggatttggagttggag
ctggagaacctggatattaatgatgatccgctggagttagactgtggagatgaggcagaa
gatcttacaaaaaagcttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttgaaacttatagtagatgcttttcttcagcagcttccaaattgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacaaaagctaacaga
aggaaactagtacgagcacttttcatagttcctagacaaaggttggatttgctaccgttt
tatgcaaggctggttgccacgttgcatccctgtatgtctgatgtagcagaggatctttgc
tctatgctgaaaggcgatttcagatttcatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgaggtttattggtgagcttaccaagtttaagatgttctccaaa
aatgacactctccactgtttaaagatgcttctgtcggacttttctcatcaccatattgaa
atggcatgtacgctgctggaaacctgtggaagattcctctttagatcaccagaatctcat
ttaagaaccagtgttcttttggaacaaatgatgagaaaaaaacaagcaatgcatctagat
gctcgctatgttacaatggtagaaaatgcctattactactgtaatcctcctccagctgaa
aaaactgtgaagaaaaaacgtcctcctttgcaggaatatattcgtaagcttctttacaag
gatctctccaaggttaccacagagaaggtcctgagacagatgcgcaagctgccttggcag
gatgcagaagtgaaagactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtt
ggaattcatgttgtggatggagtgctagaggatattcgactaggaatggaggttaaccaa
ccaaagtttaaccagcggcggatcagcagtgccaagtttttgggggaactgtacaattac
cggatggtggaatcagctgtaatatttcgaacgctctattctttcacatcatttggtgtg
aaccctgatggcagccctagtccactggatcctccagagcatcttttcagaatcagacta
gtctgcacaatcctcgatacctgcgggcaatattttgacagaggatccagcaaacgaaaa
ctcgattgcttccttgtatattttcagcggtatgtttggtggaaaaaaagcctggatgtg
tggacaaaagaccacccgtttcctatagacatagactatatgattagtgatacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctatcagacaggtccaa
gacttggaacgggaattcttaataaaattaggaattgtgaatgacaaagattccaaagat
tccattacagaaggagagaatctggaagaggatgaagaggaagaggaaggtggagcagag
acagaggaacaatctggaaatgaaagtgaagtaaatgagccagaagaagaggagggctct
gacaatgaagaagaagaaggtgaagaagaagaggaagaaaacacagattatcttacagac
tccaataaagaaaatgaaaccgatgaggagaataccgaagtaatgattaaaggaggagga
cttaagcatgtcccttgtgcagaagatgaggacttcattcaggcattggataaaatgatg
ctggaaaatcttcagcaacggagtggtgaatctgtgaaagtccatcagctggatgttgcc
attcctctgcatctcaaaagtcagctcaagaagggtccttcacttgcaggtggggaagga
gagtcagagtctggagacacgatgccatttgtcatgttaacacgaaaaggcaacaaacag
cagtttaagatcctaaatgtaccaatgtcttcccaacttgctgcaaaccattggaaccaa
cagcaagcagagcaggaggagagaatgaggatgaaaaagctcactttggatatcaatgaa
cggcaagaacaagaggactaccaggaaatgttgcagtctctggcacagcgtccagctcca
gcaaatacaaatcgtgaacggcggcctcgttaccagcatccgaagggagcacctaatgca
gatctaatctttaaaactggtgggaggagacgttga
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