Caloenas nicobarica (Nicobar pigeon): 135999738
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Entry
135999738 CDS
T11056
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cnic01009
]
135999738 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
135999738 (HDAC6)
04131 Membrane trafficking [BR:
cnic04131
]
135999738 (HDAC6)
03036 Chromosome and associated proteins [BR:
cnic03036
]
135999738 (HDAC6)
Enzymes [BR:
cnic01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
135999738 (HDAC6)
Protein phosphatases and associated proteins [BR:
cnic01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135999738 (HDAC6)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
135999738 (HDAC6)
Membrane trafficking [BR:
cnic04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
135999738 (HDAC6)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
135999738 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
DUF5848
Motif
Other DBs
NCBI-GeneID:
135999738
NCBI-ProteinID:
XP_065509368
LinkDB
All DBs
Position
29:complement(481318..505093)
Genome browser
AA seq
1073 aa
AA seq
DB search
MGRAGRRGPAQRGAGLPELKRRGRARSRREGLEAELQRLDLGAEAAAPTGTGLVYDEEFA
ASVDGSPPEAPEPLSASWAKLEQLGLAQRCVRVQCRPATDEELLLVHSPDYLARMELNPT
PAAGSSRRAVGSLLSLLRKVLSGDVRNGLALLGPPGRHEEPDGTSGRFNGVAIAAKEARS
GGQRVLLVDWCSRPSWTLPRLFQDDPGVLYFGVHGGPAPPGPPRPLSVHVCWEEVGVTSG
DFAAAFLQLLLPLGCQFQPQVVVVAAAFDTGLGAPQGHIGMTPEGLALLTHLLGALAGGR
LLLALEGPAEQGGVGAVLRALLGDSGDPPPACAPSPGGLASVARALATYGPFWSCLRRHE
PRGEEDDEEQQEDEEEAEALGGPEEAEEPPGTPPEEDGEEEEEEEEAAAAPWPRPAARTA
LLHDQRMEEHVNPWDSQHPERPQRLRRILERLEELGLAQRCLRLRARLASVAQLRACHTA
SHVGALSACRRLSPRELQSLSGRYPSLFLCPRSFRCARLAAGAACAAVSAVLGGRVQNAL
AVVRPPGHHAGPGSAGGFCLFNNVAVAARHGQRLAGGALRVLIVDWDVHHGNGTQEIFED
DPSVLYVSLHRHDGSFFPGGPGGSPRRRGRGGGSGFTLNVGWGGPRAGDADYLAAMTRLV
LPVALQFAPQLVLVSAGFDAGRGDPLGGCLVSPQTFGLMTHLLGALAGGRLVLVLEGGYN
LGVTAEGVAQCLGVLLGNPPVLPPPGAPQPAALGALARTCRLLEGAWTCLRLPAPPAEPP
KGEDGDDVTRPPDDVTGGPPTPLDTVLRLERLHLGAGPPPGHAQGAEPPPDPTQGAEPPD
PAQGVEPPPDPAQGVEPPPDPAQGVEPPDPAQGVEPPPDPAQGVEPPLDITQGAELLADT
GHGAGLPPGSAPWLLWEELEEGAPFAVTPLRDCPHLGAVAPPPGGRVLREPRPPCAACGS
RRENWVCLSCYQVLCGRYVRGHMEAHGGAHGHPLVLSLRDLSSWCYRCGGSCSPPRPSFT
ASNSAATPPPSPCDPPKPPPLLKGYTRANPPQSPAAPKPPRAPGWAGPTVGGG
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atggggagggcggggcgtcgcggccccgcccagcggggggcggggctcccggagctgaag
cgtcgtggccgcgcccggagccggcgggaggggctggaggcggagctgcagcggctggat
ctgggcgcggaggcggcggcgcccacggggacggggctggtttacgatgaggaattcgcc
gcttcggtggatgggagccccccagaagctccggagccgctttcggcctcatgggccaaa
ctggagcaactgggactggcccagcgctgcgtccgcgtgcagtgccgcccggcgaccgat
gaggagctgctgctggtgcacagccccgactacttggcccggatggagttgaaccccacc
ccggccgcaggttcttcccgccgcgctgtggggtcgctgctgtcgctgctgcgcaaggtg
ctgagcggggacgtgcggaacgggctggcgctgctggggccccccgggcggcacgaggag
ccggacggcaccagcggccgattcaacggcgtcgccatcgccgcgaaggaggcgcggagc
ggggggcagcgtgtcctcctggtcgactggtgctcccggcccagctggaccctcccccgg
ctcttccaggacgaccccggggttctgtatttcggggttcacggaggccccgcgcccccc
ggccccccccggcccttgagcgtccacgtgtgctgggaggaggttggggtgaccagcggg
gactttgcggccgcgtttctgcagctgctgctgcccctgggctgccagttccagccccag
gtcgtcgttgtcgccgccgcgttcgacaccggcctgggagccccacagggccatataggg
atgacgcccgaggggttggcgctgctgacgcacctgctgggggcgctggccggggggcgg
ctgctgctggcgctcgaggggccggcggagcagggcggggtcggcgcggtgctgcgggcg
ctgctgggggacagcggggacccccccccggcctgcgcccccagccccggcggcctggcc
agcgtggcgcgcgccctggccacctacggccccttctggagctgcctgcgccgccacgag
ccccggggcgaggaggacgatgaagagcagcaggaggatgaggaggaagcggaggctttg
ggggggccggaggaagccgaggagccgccggggacccccccggaggaggacggggaggag
gaggaggaggaggaggaggcggcggcggcgccgtggccgcggccggccgcccgcaccgcg
ctgctgcacgaccagcgcatggaggagcacgtcaacccctgggacagccagcaccccgag
cggccgcagcgcctgcgccgcatcctggagcgcctggaggagctggggctggcccagcgc
tgcctgcgcctgcgcgcccggctcgccagcgtcgcccagctgagagcgtgccacaccgcg
tcccacgtcggcgccctgtcggcgtgccggcggctgtccccgcgggagctgcagtcgctg
tccggccgctacccgtcgctgttcctgtgcccgcgctccttccgctgcgcccgcctggcg
gccggggcggcctgtgccgccgtcagcgccgtgctgggcggccgggttcagaacgccctg
gccgtggttcgcccccccggccaccacgccggccccggctcggccggcggcttctgcctc
ttcaacaacgtggccgtggccgctcggcacgggcagcgcctggcggggggcgccctcagg
gtgctgatcgtggactgggacgttcaccacggaaacggcacccaggagatttttgaggac
gatcccagcgtcctgtacgtgtccctgcatcgccacgacggctccttcttcccggggggg
cccggggggtccccgaggcgccggggccgggggggcggcagcggcttcaccctcaacgtg
ggctgggggggcccccgcgctggggacgccgactacctggcggccatgacgcgcctggtg
ctgcccgtggcgctgcagttcgccccccagctggtgctggtctccgccgggttcgacgcg
ggccggggggaccccctgggggggtgcctggtgtccccccaaaccttcgggctcatgacg
cacctgctgggggcgctggccggggggcgcctggtgctggtgctcgagggcgggtacaac
ctgggggtgacggcggagggggtggcgcagtgtctgggggtgctcctggggaaccccccg
gtgctgcccccccccggcgccccccaacccgcggccctgggggctctggcccgaacctgc
cgcctcctggagggggcctggacctgcctgcgcctgcccgcccccccggctgagcccccc
aaaggggaggatggcgatgatgtcacgcgcccccctgatgacgtcacggggggtcccccc
acccctctcgacaccgttttgcggctggaacggctgcacctgggggcggggcctccgccg
ggccacgcccagggggcggagcctccgccagatcccacccagggggcggagcctccagat
cccgcccagggggtggagcctccgccagatcccgcccagggggtggagcctccgccagat
cctgcccagggggtggagcctccagatcccgcccagggggtggagcctccgccagatccc
gcccaaggggtggagcctccgctcgacatcacccaaggggcggagcttctggctgacacc
ggccatggggcggggcttcctcccggctctgccccctggctgctgtgggaggagctggag
gagggggcgccgttcgccgtcacccccctgcgcgactgtccgcacctgggcgccgtggcc
ccgcccccgggtgggcgtgtcctgcgggagccccgccccccgtgcgcggcctgcgggagc
cggcgggaaaactgggtgtgcctgagctgctaccaggtgctgtgcgggcgctacgtgcgg
gggcacatggaggcgcacgggggggcccacggacaccccctggtgctgagtctgcgcgac
ctgtcgagctggtgctaccgctgcggggggtcctgctccccgccaagaccctcgtttacc
gcctcaaattcggcagcgacccccccaccctctccctgtgacccccccaaacccccacct
ctcttaaagggctacacgcgtgccaaccccccccaatcaccagcagcccccaaacccccc
cgggctccaggctgggccggacccacagtggggggcgggtaa
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