KEGG   Caloenas nicobarica (Nicobar pigeon): 135999963
Entry
135999963         CDS       T11056                                 
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
cnic  Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:cnic00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cnic04131]
    135999963 (COPA)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cnic04147]
    135999963 (COPA)
Membrane trafficking [BR:cnic04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    135999963 (COPA)
Exosome [BR:cnic04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   135999963 (COPA)
  Exosomal proteins of bladder cancer cells
   135999963 (COPA)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 135999963
NCBI-ProteinID: XP_065509627
LinkDB
Position
31:complement(3219517..3241960)
AA seq 1224 aa
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSVTLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDRLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVAERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EKETIPDIDHNAKLLQPPAPVMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDAV
GTEGWGEDAELQLDEDGFVDAGEGFGEEGLGKGQEEGGGWEVEEDLDLPPELDVPTGPAG
AAEDGFFVPPTKGTSPAQVWCNNSQLPVDHILAGSFETAMRLLHDQVGVTNFGPYKQLFL
QTYARGRTTYQALPCLPTMYGYPHRNWKEAGLKNALPAIGLKLNDLIQRLQICYQLTTAG
KFEEAVEKFRSILLSVPLLVVDNKQEITEAQQLIAICREYIVGLSMEIERKKLPKETLEQ
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNPADTYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYCPEFHGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq 3675 nt   +upstreamnt  +downstreamnt
atgctgaccaagttcgagaccaagtcggcccgggtgaaaggcctcagctttcaccccaag
cggccgtggatcctcaccagcctgcataatggcgtcatccagctgtgggattatcggatg
tgcaccctcatcgacaagttcgatgagcacgacggacctgttcgaggtattgatttccac
aagcagcagcctctctttgtttctggaggtgacgattataaaataaaggtctggaattac
aaattgcgccgttgtctcttcactctgctcgggcacttggattatattcgcacgacgttc
ttccaccacgaatatccctggatcttgagtgcttctgatgaccagaccattcgggtttgg
aactggcagtccagaacttgtgtttgcgtgctgacaggacacaaccactatgtgatgtgt
gcccagtttcacccctccgaggacctggtagtgtcggccagcttggatcagaccgtgcgc
gtttgggatatttctggcctaaggaagaagaacctgtcccctggagctgtggaatcggat
gtcaggggaataactggtgtggatttgtttgggacaacagatgcagttgtgaagcacgtt
cttgagggccatgatcgtggggtgaactgggctgcattccacccgacaatgccgcttatc
gtgtcgggagctgacgatcggcaagtgaagatctggcggatgaacgaatcgaaggcgtgg
gaggttgacacttgccgggggcattacaacaatgtctcgtgcgctgtctttcacccgcgg
caggaactgatcctcagcaattcggaagacaagagcatccgtgtctgggatatgtctaaa
cgcacgggtgtccagacctttcggcgtgatcacgatcgcttttgggtattggctgctcat
cccaacctcaatctctttgcagcaggccatgacggtggcatgattgtgttcaaactggag
cgggagagacctgcttatgccgtgcatgggaacatgctgtattatgtgaaggaccgtttc
ctccgccagcttgatttcaacagctcaaaagatgttgctgtcatgcagctgcgaagtggt
tccaagttccctgtgttcaacatgtcttacaacccagctgagaatgctgtccttctctgc
acaagagccagcaacttagagaacagtacttatgacctgtacaccattcccaaggatgca
gactcccagaatccggatgcccccgaagggaagcgttcttccgggctgacagctgtgtgg
gtcgctcggaaccgctttgcagtcctggatcgcatgcattcgatcctcatcaaaaacctg
aagaatgagattacgaagaaggtgcaggtgccgaactgtgatgagattttctatgctggc
acagggaacctgttactgagagacgcagactccgtcaccctgtttgacgtgcagcagaag
cgaactctggcatccgtgaagatctccaaggtgaaatacgtcatctggtcggctgacatg
tctcatgttgctctgctggcaaagcacgccatcatgatatgcaacagaaagctggagtca
ctgtgtaatatccatgaaaacatccgcgtcaagagcggtgcctgggatgaaagcggtgtt
ttcatctacaccaccagcaatcacatcaaatacgctgtcaccacaggggatcacggaatt
atccgcaccctggacttgcctatctacgtgacccgcgtaaaggggaacaacgtgtactgc
ctggacagagagtgccgccccagagtcctcactattgatcccacagaattcaaattcaag
ctggcattgatcaacagaaagtatgatgaggtgctgcacatggtgaggaatgcgaagctt
gtgggccagtccatcattgcctacctgcagaaaaaaggctaccctgaggtggcactgcac
tttgtcaaggatgagaagacccgtttcagcctcgcactggagtgtggcaacattgagatt
gctctggaagcagccaaggctctggatgacaagaattgctgggagaaactgggagaagtg
gcgttactgcagggaaatcaccaaattgtggagatgtgctaccagcgcaccaagaatttc
gatagactctccttcctctatctcatcactggcaatctggagaagcttcggaagatgatg
aagatagctgagatccgtaaggatatgagtggccactaccagaatgccttgtatctagga
gatgtggcagagagagtgaggatcctgaagaactgtgggcaaaagtccctggcctatctc
acagctgcaactcatggtctggatgaggaagctgaaagcctgaaggaaacatttgatccc
gaaaaggaaacgattccagacattgatcacaatgcaaaactgctgcagcctcctgctccc
gtcatgccgttggataccaactggccattgctgactgtctccaaggggttctttgaagga
acaattgctagcaaaggcaaaggaggagccttggctgctgatattgatatcgacgctgtt
ggcactgagggctggggagaagatgcagagttgcagctggatgaagatggctttgtggat
gctggagaaggctttggagaggaaggtctaggtaaaggacaagaagaaggaggtggatgg
gaagttgaggaagatttggatcttccccctgaactggatgttcctacaggtccagcagga
gcagctgaggatggattctttgtgccacccaccaagggcaccagcccagctcaggtgtgg
tgtaacaattctcagcttcctgtggaccacattctggcaggttcctttgagacagcaatg
agactcctccatgaccaggtaggagtaacaaactttggaccctacaagcagctgttcctg
cagacctatgcccgtggccgcacgacctaccaagctctgccgtgtctccctaccatgtac
ggatacccacatcgcaactggaaagaagctggcttgaagaacgccctccctgccattggg
ctgaaactgaacgacctgatccagcgcctgcagatctgctaccagctgactacggctggc
aagtttgaggaggctgtggagaagttccgctccatcttgctcagtgtgcccttgctggtg
gtggataacaagcaggagatcactgaggctcagcagctgattgctatttgccgggagtac
attgtaggactctcgatggagattgagcggaagaagctgcccaaagagaccctggagcag
cagaagcgaatctgcgagatggctgcctatttcacccactccaacctgcagcctgtccac
atgatcttggtgctgcgtactgctctcaacctctttttcaaactcaaaaacttcaagaca
gctgctacttttgcccgtcgcctgctggagctgggtccaaagcctgaggtggctcagcag
actcgcaagatcttgtcagcatgtgagaagaatcccgctgacacctaccagctcaactat
gacatgcacaacccctttgatatctgtgctgcctcttaccgacccatctatcgtggcaaa
ccagtggagaagtgtccgctcagcggagcctgctactgccccgagttccatgggcagatc
tgccgtgtcactacggtgacggagattggcaaagatgtcatcgggctgcggatcagcccg
ctccagttccgctag

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