Caloenas nicobarica (Nicobar pigeon): 136000169
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Entry
136000169 CDS
T11056
Symbol
DENND4B
Name
(RefSeq) DENN domain-containing protein 4B
KO
K20163
DENN domain-containing protein 4
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnic04131
]
136000169 (DENND4B)
Membrane trafficking [BR:
cnic04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
136000169 (DENND4B)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR_long
DUF2464
PPR
Motif
Other DBs
NCBI-GeneID:
136000169
NCBI-ProteinID:
XP_065509969
LinkDB
All DBs
Position
31:complement(1929396..1938807)
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AA seq
1444 aa
AA seq
DB search
MSDENPPQLVDYFVVAGLTDTSRPLEEENQQHRPARPSEPITDVAVIIRSQGEEVPHGFT
CIETTTSGHPVDLNAGLLNNPQMFLCYKRGRDKPPLIELGVHYEGKDRPKAGYKILETTP
YSRSANLNSGGPGHQRTFLTYRRAAEPHGHNTLGVTDICLVMPSKGESTPHTFCRVDKNL
NTSMWGPALFLCYKIAMAKANTLVYEAGLLGRYPEQDSESFPLPESVPVFCLPMGATIES
WPADTKYPLPVFSTFVLTGASGDKVYGAAIQFHEAFPRERLSEKQSLRLGLLSVVDRRPV
GGRSLQTRKSICVLSHWPFFDVFRKFLMFIYRYSISGPHVLPLETHISHFMHNVPFPSPQ
RPRILVQMSPYDNLLLCRPVSSPLPLSGASFLTLLQNLGPENAVALLVAVLTEQKLLVHS
LRPDVLTSVGEALVAMIFPLRWQCPYIPLCPLALADVLCAPVPFIVGIHSSYFDLYEPPR
DVIFVDLDTNTIFQSEERKPLSPRALPRRPCKVLLASLHNISQQLDELYSGPGEEASLEL
LLSDAEAARGRRAQLELEARAAFLRFMACALRGYRSFLRPIAPAPAPAGRDTGSLFALQG
FLKSRDRAYHRFYGQLLRTQLFTQFIEDCSFASDRDPCLEFFDTCVDKVQAELEKPEDTP
LMELDDPRGGEHTVFITPPEEPVGPDGTELPALYRYDGFPALRPELLEPPRDPLVAQLCQ
ARSSAPSSPAPRRTKQEMKVAQRVAQKYSSVPDMWAKCLLGHCYGLWFLYLPTHVRAAPA
KLRALQLAYEVLRKMETHKVVLPDEVCYRILMQLCGQYGEPVLSVRVLLEMKRAGIVPNT
ITYGYYNKAVLESKWPAGTQSGRLRWAKLRNVVLGAAQFRQPLRQRERRAAAAAAPPAAP
APRPSLQRQTTWAGRSLRDPPPAPRLVKSGSLSFHGEGGRGGPGEPPAARPSPPPAAPEP
LPPRLRGPPGSADGSLSDVSFATDESDRADEGPAAAGGTPRRGLAAKLQQLLSPGKRPSL
RPPPASAEPPPGPQDPEQRDGEPPPRRSPADTLLRPRERPESTASESSVSLGSELDLSDT
SVGSTGVPKSEPPGDGASGQEPPAVEVLLSSCSRCQGCGALVYDEEVMAGWTSDDSNLNT
TCPFCARAFVPFLSIEIQDFQLPPSAAEDASVPPSAAQGPVLSDRRRCLALDEAEPELCN
GIPDTPAPRRSERVAFAYLSPLVLRKELESLVENEGGEFLAQPELVDSHPIIYWNLVWYF
QRLGLPSNLPRLLLGSQHVTPATQAQLPESPSVRVRLLWDVLAPEPDSCPPLYVLWRLHS
NVPTRLRSWRPHGPPFSLAFLESLLSHVGLSEVHKAIALFLETLAAPGGPRHMPRSIYRE
LLFLTLAALGREHMDIAAFDKKYKSAYAKLAGSLGKDELRRRRAQPPSSKAIDCRKSFGA
TLEC
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgagaaccccccgcagctggtggactatttcgtggtggccggactgacggac
acgtcgcggccgctggaggaggagaaccagcagcaccgcccggcgcggcccagcgagccc
atcaccgacgtggccgtcatcatccgctcgcagggcgaggaggtgccgcacggcttcacc
tgcatcgagaccaccacctcgggccaccccgtggacctcaacgccgggctgctcaacaac
ccccagatgttcctctgctacaagcgaggccgggacaagccgccgctcatcgagctgggg
gtgcactatgagggcaaggaccgcccgaaagcgggctataagatcctggaaacgacgccg
tacagccgctcggccaacctcaactcgggggggccggggcaccaacgcaccttcctgacg
taccggcgggcggccgagccccacggccacaacacactgggggtcaccgacatctgcctc
gtcatgcccagcaagggcgagagcaccccccacaccttctgccgggtggacaagaacctc
aacaccagcatgtggggcccggccctgttcctctgctacaagatcgccatggccaaggcc
aacacgctggtctacgaagcagggctgctggggcgttacccggagcaggacagcgagtct
ttccccctccccgaatcggtgcccgtgttctgcctgcccatgggggccaccatcgagagc
tggccggccgacaccaagtacccgctgcccgtcttctccaccttcgtgctcaccggcgcc
tcgggcgacaaggtgtacggggcggccatccagttccacgaggcgtttccgcgggagcgg
ctgtcggagaagcagagcctgcgcctggggctgctgagcgtggtggaccggcggccggtg
ggcggccgctcgctgcagacacgcaagagcatctgcgtcctctcccactggcccttcttc
gacgtcttccgcaagttcctcatgttcatctaccgctactccatctccgggccccacgtg
ctgcccctcgagacgcacatctcgcatttcatgcacaacgtccccttcccgtccccgcag
cggccgcgcatcctggtccagatgtccccgtacgacaacctgctgctgtgccggcccgtc
tcttccccactgccgctcagcggtgccagcttcctgacgctgctgcagaacctgggcccc
gagaacgcggtggctctgctggtggccgtcctgaccgagcagaagctgctcgtccactcc
ctgcgccccgacgtcctcaccagcgtgggcgaagcgctggtggcgatgatcttccccctg
cgctggcagtgcccctacatcccgctgtgcccgctggcgctggctgacgtgctgtgtgcc
cccgtgcccttcattgtaggcatccactccagctacttcgacctctacgagcccccccgc
gacgtcatcttcgtcgatttggacaccaacaccatcttccagagcgaggagcgcaagccg
ctgtccccgcgcgcgctgccccgccggccctgcaaggtgctgctggcctcgctgcacaac
atctcccagcagctggacgagctgtacagcgggccgggggaggaggcgtcgctggagctg
ctgctgagcgacgcggaggcggcgcggggccggcgggcgcagctggagctggaggcgcgg
gcggcgttcctgcggttcatggcctgcgccctgcgcgggtaccgctccttcctgcgcccc
atcgccccggcccccgcgcccgccggccgcgacaccggcagcctcttcgctctgcagggg
ttcctcaagtcccgggaccgcgcgtaccaccgcttctacgggcagctgctgcgcacgcag
ctcttcacgcagttcatcgaggactgctccttcgccagcgaccgcgacccctgcctcgag
ttcttcgacacctgcgtggacaaggtgcaggcagagctggagaagcccgaggacaccccc
ctgatggagctggacgacccacgggggggcgaacacaccgtcttcatcaccccccccgag
gagccggtggggcctgacggcaccgagctgcctgcgctgtaccgctacgacgggttcccc
gcgctgcgccccgagctcctggagcccccccgggacccgctggtggcccagctgtgccag
gcccgcagcagcgcgcccagcagcccggccccgcgccgcaccaagcaggagatgaaggtg
gcccagcgcgtggcgcagaaatactcctcggtgcccgacatgtgggccaagtgcctgctg
ggccactgctacgggctctggttcctctacctgcccacccacgtccgcgccgcccccgcc
aaactgcgcgcgctgcagctggcctacgaggtgctgcgcaagatggagacgcacaaagtg
gtgctgccggacgaggtctgctaccgcatcctgatgcagctctgcgggcagtacggcgag
ccggtgctgtcggtgagggtgctgctggagatgaaacgcgccggcatcgtgcccaacacc
atcacctacggctactacaacaaggcggtgctggagagcaagtggccggcggggacgcag
agcgggcgcctgcgctgggccaagctccgcaacgtggtgctgggggccgcccagtttcgg
cagcccctgcggcagcgggagcgccgggcggccgccgccgccgcccccccggccgccccg
gcgccccggcccagcctgcagcgccaaaccacctgggccgggcgcagcctgcgggacccc
cccccggccccccggctggtgaagagcggcagcctcagtttccatggtgagggcggtcgg
ggggggcccggggagccccccgctgcccggccgtcccctcctcccgcagccccggagccg
ctgcccccccggctgcgtggcccccccggctctgccgatgggagcctgtcggacgtcagc
ttcgccacggacgagagcgaccgggcggacgaggggccagcggcggcggggggcacgccg
cggcgggggctggcagccaagctgcagcagctactgtcccccggcaaacggccctcgctg
cggccccccccggccagcgccgagcccccccccggcccccaggaccccgagcagcgggac
ggggaaccccccccgcgccgcagccccgccgacacgctgctgcgcccgcgggagcgcccc
gaatccaccgcctccgagagctccgtctcgctgggcagcgagctggacctgtcggacacg
tcggtggggagcaccggtgtccccaaatccgaaccgccgggtgacggggcgagcgggcag
gagccgcccgctgtggaggtgctgctgtccagctgctcgcggtgccagggctgcggcgca
ctggtgtacgacgaggaggtgatggccggctggacctcggacgactccaacctcaacacc
acctgccccttctgcgcccgagccttcgtccccttcctcagcatcgagatccaggacttc
cagctgccccccagcgccgccgaagacgcctccgtccctcccagcgccgcgcagggaccg
gtgctcagcgaccgccgccgctgcctggccctggatgaggccgagccagagctctgcaac
ggcatcccggacacaccggcgccgcggcggtcggagcgggtggctttcgcctacctgagc
cccttggtgctgcggaaggagctggagagtttggtggagaatgaggggggggagtttttg
gcgcagccggagctggtggacagtcaccccatcatctactggaacctcgtctggtacttc
cagcgcctggggctgcccagcaacctcccccgcctgctcctgggctcccagcacgtcact
ccggccacgcaggcgcagctcccggagtccccgtcggttcgcgtgcggctgctgtgggac
gtgctggcccccgagcccgacagctgccccccgctttacgtcctctggaggcttcacagt
aacgtccccacgcggctgcggtcctggcggccccacggcccccccttctcgctggccttc
ctggagagcctgctgagccacgtggggctgagcgaggtgcacaaagccatcgcgctcttc
ctcgagacgctggccgccccgggggggccgcgacacatgcccaggagcatctaccgcgag
ctgctgttcctcacgctggcggcgctgggcagggagcacatggatatcgccgcttttgac
aagaaatacaagtcggcgtacgccaagctggccgggagcctgggcaaggacgagctgcgg
cggcggcgggcgcagccccccagctccaaagccatcgactgccgcaagagcttcggggcc
accctggagtgttag
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