Caloenas nicobarica (Nicobar pigeon): 136000326
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Entry
136000326 CDS
T11056
Symbol
SYVN1
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04120
Ubiquitin mediated proteolysis
cnic04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
136000326 (SYVN1)
04120 Ubiquitin mediated proteolysis
136000326 (SYVN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cnic04121
]
136000326 (SYVN1)
Enzymes [BR:
cnic01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
136000326 (SYVN1)
Ubiquitin system [BR:
cnic04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
136000326 (SYVN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-ANAPC11
zf-RING_5
zf-RING-like
zf-HC5HC2H
zf-Nse
Endonuclease_7
Motif
Other DBs
NCBI-GeneID:
136000326
NCBI-ProteinID:
XP_065510177
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All DBs
Position
32:228630..240226
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AA seq
585 aa
AA seq
DB search
MLCTAAVMAGSLALTTAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWLFHFRIVSLMFLLGVLDFLFVNHAYHSILTRGASVQLVFGFEYAI
LVTMVLTVFVKYVLHSIDLQNENPWDSKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAVDNVCIICREEMVT
GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRATLPAQPPPEPPQQAPPPAQPPQVP
QPPNFPQGLLPPFPPGMFPFWPPVAPFPPPGAEPAAPGESVSPKITQTAPNRRXSGRADA
AFVAAAAASSSSSRPGDATNAASEPAAPPGLPLPPPWLGTPWPPVFGLPPMPVPPAGFAG
LTEAELRAMEGQERQHLEARLQCLHNIHTLLDAAMLQINQYLGVLASLGSPRPAQPSDPP
GAEPGPPGAAGPSAAPPAGDEEDEEEEPDAVELRRRRLQKLAAPL
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgcacggcggcggtgatggccgggagcctggcgctcaccacggccgtggtggct
cacgcctattacctgaagcaccagttctaccccaccgtggtttatctcaccaaatccagc
cccagcatggccgttctctacatccaggccttcgtcctggttttcctgctgggcaagttc
atggggaaggtgttttttgggcagctgcgggcggccgagatggagcacctcctggaacgc
tcctggtacgcggtgactgagacctgcttggccttcaccgtcttcagggacgacttcagc
ccgcgcttcgtcgcgctcttcaccctcctcctcttcctcaagtgcttccactggttggcc
gaagaccgcgtggactttatggagaggagccccaacatctcctggctcttccacttccgg
atcgtctcgctgatgttcctcctgggcgtcctggacttcctgttcgttaaccacgcctac
cacagcatcctaacgagaggagcctccgtccagctcgtctttggcttcgagtacgccatc
ctggtcaccatggtcctcaccgtcttcgtgaagtacgtcctgcactccatcgacctgcag
aacgagaacccctgggacagcaaagccgtctacatgctctacaccgagctcttcaccggg
ttcatcaaggtcctgctctacatggctttcatgaccatcatgatcaaagtccacaccttc
ccgctcttcgccatccgccccatgtacttggccatgaggcagttcaagaaggccgtgacc
gacgccatcatgtcgcgccgcgccatccgcaacatgaacaccctctaccccgacgcgacg
cccgaggagctgcaggccgtggacaacgtctgcatcatctgccgcgaggagatggtgacg
ggcgccaagcgcctgccctgcaaccacatcttccacaccagctgcctgcgctcgtggttc
cagcgccagcagacgtgtcccacgtgccgcatggacgtcctgcgcgccaccctccccgcg
cagccgccgccggaaccgccccagcaggcgccgcccccggcgcagcccccccaggtcccc
cagccccccaactttccgcaggggctgctccccccgttcccaccggggatgttcccgttt
tggccgccggtcgctcccttcccgccccccggtgccgaacccgccgcccccggtgagtcc
gtttcccccaaaatcacccaaacggcaccgaatcggcgcnnttccggccgcgctgacgcc
gcctttgtcgccgcagctgccgcctcctcctcctcctcccgccccggtgatgccaccaac
gccgcgtcggaaccggcggcaccgccggggctgcccctcccgccgccctggctggggacg
ccctggccgcccgtttttgggctcccgccgatgccggtgccgccggccgggttcgcgggg
ctgacggaggccgagctgcgcgccatggaggggcaggagcggcagcacctggaggcgcga
ctgcaatgtctgcacaacatccacacgctgctggacgcggccatgctgcagatcaaccag
tacctgggcgtgctggcctccctggggtcgccccgtccggcccagcccagcgaccccccc
ggtgcggagcccggaccccccggagccgctggtcccagcgccgcgccccccgcgggcgat
gaggaagatgaggaggaggagccggacgcggtcgagctgcggagacggcgcctccagaaa
ctggcggctccgctctga
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