KEGG   Caloenas nicobarica (Nicobar pigeon): 136000505
Entry
136000505         CDS       T11056                                 
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
  KO
K19719  collagen type II alpha
Organism
cnic  Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04510  Focal adhesion
cnic04512  ECM-receptor interaction
cnic04518  Integrin signaling
Brite
KEGG Orthology (KO) [BR:cnic00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    136000505 (COL2A1)
   04518 Integrin signaling
    136000505 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    136000505 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:cnic00536]
    136000505 (COL2A1)
Glycosaminoglycan binding proteins [BR:cnic00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   136000505 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 136000505
NCBI-ProteinID: XP_065510420
LinkDB
Position
33:766576..779643
AA seq 1305 aa
MAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPMGPR
GPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA
GAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPA
GAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSA
GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAP
GPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPK
GATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVM
GFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS
GFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP
GTPGTDGPKGATGPAGPTGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD
GARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGAD
GQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAA
GRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGED
GPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPV
GPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPT
GKQGDRGETGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLP
GPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPP
GNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPIRYMRADEAAGGLRQHDVEVDATLKAL
NNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGET
CVYPNPRSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDEDLAPNTANIQMTFLRLLS
TEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHT
GKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCFL
NT seq 3918 nt   +upstreamnt  +downstreamnt
atggcgggcggcttcgatgagaaggccggaggcgcacagatgggcgtcatgcagggaccc
atgggccccatgggaccccgcggcccccccggaccctccggtgctcctggtccccaagga
tttcaaggcaaccccggtgaacctggcgagcccggcgctgctggtccgatgggtccccga
gggccaccaggaccccctgggaaacccggtgacgacggcgagactggcaaacccggcaaa
tccggcgagcgcggcccccccggcccccagggtgcgcgtggcttccccgggacacccggt
ctccccggagtgaaaggccaccggggctaccccggcttggacggcgccaagggagaggca
ggggctcccggagccaagggcgaatccggctcccccggcgagaacggctcccccggcccc
atgggtccccgcgggctgcccggagagcgaggacgtcccggcccctccggcgctgcgggt
gctcgtggcaacgatggcctccccggcccggctggaccccccggacccgttggcccggcc
ggagcccccggcttccccggtgcccccggctcaaagggtgaagcgggtcccaccggcgct
cgcggtcccgagggtgcccagggaccccgtggtgaatccggcacccccggctctcctggc
cctgccggtgcccccggtaacccagggactgacggcatccccggcgcaaagggatcagcg
ggtgcccccggaatcgctggcgctccaggcttccccggcccccgcgggccccccggaccc
caaggtgccaccggcccgctgggacccaagggacagacgggagaacccggcatcgccggc
ttcaagggcgaacagggaccgaagggcgagacgggacccgcaggaccccaaggtgccccc
ggacccgctggcgaggaaggcaagagaggagcccgcggtgaaccgggtgctgctggcccc
gtgggaccacccggagagaggggcgcccctggcaaccgcggcttccccggccaggacggg
ctggctggacccaagggtgctccgggcgagcgcggccccgccgggctggcgggtcccaaa
ggagccaccggtgaccccgggcgccccggagagccgggcctgcccggagccaggggtctc
accggccgccccggtgacgcgggtccccaaggcaaagtcggcccaaccggtgctcccggc
gaggacgggcgccccggcccccccggcccgcagggtgctcgcggccagcccggtgtgatg
ggtttccctggtcccaaaggcgctaacggcgagcctggaaaagccggagagaaagggctc
cccggcgccccagggctgcggggtctccccggcaaggatggtgagacaggagctgccggc
cccccaggacctgccggtcctgcaggcgagaggggagaacaaggagcccctggtccctct
ggcttccaggggctgcccgggccaccaggtccccctggcgagagcggcaaacccggagat
cagggtgttcctggagaagccggtgcccccggtctcgtcggtcccagaggcgaacgcgga
ttccccggtgaacgcggctcccccggcgcacaagggctgcaaggtccccgcgggctcccc
ggcacgccgggcaccgacggacccaagggtgcaaccggcccggcaggccccaccggcgcc
cagggccccccagggctgcaggggatgccgggcgagagaggagccgccggcattgctggc
cccaagggtgacaggggagacgtcggagagaagggtcccgagggagcccccgggaaggac
ggcgcacgcggtctcacgggtcccattggtccccccggccccgccggccccaacggcgag
aagggtgaatccggcccccctggtccatctggtgctgccggtgcccgcggtgcccctggt
gagcgtggtgagcccggtgcccccggtcccgctggatttgctggccccccgggcgccgat
gggcaacctggtgccaaaggcgaacaaggagaacccgggcagaagggtgacgccggcgct
cccggtccccaaggtccctccggcgcacctggcccgcagggtccaactggtgtaactggt
cccaaaggagcccggggtgctcagggcccccctggagccactggattccccggcgccgct
ggccgcgtgggaccacccggccctaatggtaacccgggcccccccggcccccccggctct
gctggcaaagacggtcccaagggcgctcgtggtgacgccggccccccgggccgtgccggt
gaccctggtctccaaggccctgctggtccccccggcgagaaaggcgaacctggcgaggac
ggccccgcgggtcctgacggtccccccggtccccaaggcttggcaggacagcgcggcatc
gtcgggctgcccggccagcgcggcgagagaggcttccccgggctgccggggccgtcgggc
gaacctgggaaacaaggagcacctggctctgcaggcgaccgcggcccccccggccccgtg
ggcccccccggtttgacgggtcctgccggcgaacccgggcgcgagggtaaccctggcgca
gacgggccccccggcagagacggcgcagccggcgtgaagggcgatcgtggcgagacgggt
cccgtgggtgcccccggcgctcccggtgcccccggcgctcccggccccgtgggtcccacc
ggcaaacagggagacagaggcgagacgggcgcacaaggtcccatgggtcccgccggcccc
gctggcgctcgaggcatgccgggtcctcaagggcctcgtggtgacaagggcgagacggga
gaggctggagagagagggctgaagggtcaccgcggcttcaccgggctgcaggggctgccc
ggaccacccggtccttctggagaccaaggtgctgctgggcccgcgggtccctccggtccc
aggggtccccccggccccgtcggcccctctggcaaagacggttccaacggcatgcccggc
cccatcggcccccccggcccccgcgggcggagcggcgaaccaggtcccgcgggtcctcct
ggaaacccaggtccccccggtcctcccggcccccccggcaccggcatcgacatgtcggct
ttcgccggcctgggccagcccgagaagggtcccgaccccatccggtacatgcgtgcggac
gaggcggccggcgggctgcggcagcacgacgtggaggtggacgccacgctcaaggccctc
aacaaccagatcgagagcatccgcagccccgagggctccaaaaagaacccggccaggacc
tgccgcgacatcaagctttgccatcccgagtggaagagcggagactactggatcgacccg
aaccaaggctgcactttggacgccatcaaagttttctgcaacatggagacgggtgagacc
tgcgtctaccccaaccccaggagcatccccaagaagaactggtggaccagcaagaccaaa
gacaagaagcacgtctggttcgcagagaccatcaacggcgggttccactttagctacggt
gatgaagacctggctcccaacaccgccaacatccagatgaccttcctgcggctgctctcc
accgaaggctcccagaacgtcacttaccactgcaagaacagcatcgcctacatggacgag
gagacgggcaacctgaagaaagccatcctcatccagggctccaacgacgtggagatccga
gccgagggcaacagcaggttcacctacagcgtcctggaggacggctgcacgaaacacacc
ggcaagtggggcaagacagtcatcgagtaccggtcacagaagacctcgcgcctgcccatt
gtagatattgcacctatggacattggtggagccgagcaggagtttggcgtggatattggc
ccagtctgcttcttgtaa

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