Caloenas nicobarica (Nicobar pigeon): 136000756
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Entry
136000756 CDS
T11056
Symbol
VARS1
Name
(RefSeq) valine--tRNA ligase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
136000756 (VARS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
cnic01007
]
136000756 (VARS1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cnic03016
]
136000756 (VARS1)
Enzymes [BR:
cnic01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
136000756 (VARS1)
Amino acid related enzymes [BR:
cnic01007
]
Aminoacyl-tRNA synthetase
Class I (U)
136000756 (VARS1)
Transfer RNA biogenesis [BR:
cnic03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
136000756 (VARS1)
Prokaryotic type
136000756 (VARS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
tRNA-synt_1g
GST_C
tRNA-synt_1_2
GST_C_2
tRNA-synt_1e
GST_C_3
Arc1p_N_like
Jag_N
Motif
Other DBs
NCBI-GeneID:
136000756
NCBI-ProteinID:
XP_065510784
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All DBs
Position
35:complement(<722616..755715)
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AA seq
1174 aa
AA seq
DB search
MVRPKPRPPLVPPANRDAPSRPRRRARGGGGGEPAAPAHAQPPLPAQPTCVSSRRRRSHV
PPRAVPAAPPLDPRAQRVLIAAAFSPGPPPEIQHVAHPPPPDSGTPLPALRTPGGTLLGG
PGPVAWFLSPPQMLGGGPGGAALVRQWVGVAERELAPAGAIAQGGDAQARGRARRELLRV
LGALESQLEGRSFLVGAGPTLADVTVTCALLGPFRGVLDGPARAPFPSVLRWFDSCLRLP
QFRGVLGAVGPWGAGPPLPPVELSPAGQEEPPVGQEPGGQDGSMGQDGSMGQDSAPPPAK
TPAQLKKEAKKREKLEKFQQKQEKNRELQAQGRGRRKERRDPQGATYDVETPPGQKKDVS
QPLPASYSPRFVEAAWYPWWEQQGLFRPQYGRAGVAAPNPRGVFAMVLPPPNVTGSLHLG
HALTAAIQDSLTRWQRMRGATTLWVPGCDHAGIATQAVVERRLWRSRRQTRQQLGRERFL
QEVWAWKHEKGDRIYQQLRRLGASLDWERACFTMDPRMSRAVTEAFVRLHDAGLIYRSTR
LVHWSCALRSAIADIEVEKRELGGRTLLKVPGYEEPVEFGVLVAFAYELEGDGEGPREEL
VVATTRLETMLGDVAVAVNPDDPRYQHLRGRRVRHPFTGRSLPVLHDPFVDPEFGTGAVK
VTPAHDATDYEVGQRHGLEMVTVIGDDGTMQNVPEPFLGLPRFSARAAVLGALQQRGLFR
GVTENPMVVPICSRSGDVLEPLLKPQWYLRCGELGAAAGGAVRDGRLRLRPPGHARTWFQ
WMDNIRDWCISRQLWWGHRIPAYFVTIDQPHTAPGEDTDGRFWVSGRSPEEAREKAAEKF
GVKPEEIQLRQDEDVLDTWFSSGLFPFSALGWPEQTEDLAVFYPGSLLETGHDILFFWVA
RMVMLGLALTGRVPFKEVYLHAIVRDAHGRKMSKSLGNVIDPLDVIGGIGLEELHQQLLN
SNLEPAELERAREGQKRDFPTGIPECGTDALRFALCAYTAQGRDINLDVGRVLGYRHFCN
KIWNGAKFILGALGPHYRPPPGIQGRGRAGLAERWVRSRLARAVGAVGAALGEFDFPAAT
TAIHGLWVYELCDVYLECAKPVLSRAAAESGDTGGAPRDPSDPGDAPADPPGDSGDAASV
RDTLYVCLSVGLRLLAPFMPFVTEELGSGCRPPT
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggtccgaccgaagccccgcccacccctcgttcctccagccaatcgggacgcgccgtcc
cggccgcgcaggcgcgctcggggggggggggggggggaaccggccgctcccgcgcatgcg
cagccgccgctgcccgcgcagcccacgtgcgtctcctcgcgccgccgccgcagccatgtc
cccccccgtgctgttcctgccgccccccccctggacccccgcgcccagcgcgtcctcatc
gccgccgccttcagccccggccccccccccgaaatccagcacgtcgcccaccccccgccc
cccgactcggggacccccctccccgccctgcgcacccccggggggaccctcctggggggg
cccggcccggtcgcctggttcctgagccccccccaaatgctggggggggggcccgggggg
gcggcgctggtgcgtcaatgggtgggggtcgccgagagggagctggcgccggcgggggcc
atcgcccaggggggggacgcgcaggcccgcgggcgcgcgcgccgggagctgctgcgcgtt
ctgggggcgctggagtcgcagctcgaggggcgcagcttcctggtgggggcggggccgacg
ctggcggacgtgaccgtgacctgcgccctcctggggcccttccgcggggtgctggacggc
ccggcccgggccccgttcccgtccgtcctgcgctggttcgactcctgtttgcggctgccc
cagttccggggggtcctgggggccgtggggccgtggggggcggggccgcccctccccccg
gtggagctgagccctgcggggcaggaggagccgcccgtggggcaggagcccggggggcag
gacggatctatggggcaggacggatctatggggcaggactcggcccctccccccgccaag
actccggcgcagctgaagaaagaggcgaaaaaacgggagaaactggagaaattccaacag
aaacaggagaagaaccgggagctgcaggcgcagggtcgggggcgacgcaaggagcgacgg
gacccccagggggcgacgtacgacgtggagacccccccggggcagaaaaaggacgtgtcg
cagcccctccccgcctcgtacagcccccgcttcgtggaggccgcgtggtacccctggtgg
gagcagcaggggctgttccggccccagtacgggcgcgcgggcgtcgcggcccccaacccc
cgcggcgtgttcgccatggtgctgccgccccccaacgtcaccggcagcctgcacctgggc
cacgcgctcaccgcggccatccaggacagcctgacccgctggcagcgcatgcggggggcg
acgacgctgtgggtcccgggctgcgatcacgccggcatcgccacgcaggccgtggtggag
cggcggctctggcgctcgcggcgccaaacgcggcagcagctcggccgggagcgcttcctg
caggaggtctgggcctggaaacacgaaaagggcgaccggatctaccagcagctgcggcgc
ttgggggcgtctctggattgggaacgagcctgtttcaccatggacccccgcatgtcgcgg
gcggtgaccgaggcgtttgtccgtctgcacgacgcggggctgatctaccgcagcacccgc
ctggtgcactggagctgcgccctgaggtccgcgatcgccgacatcgaggtggagaagcgg
gagctggggggccggacgctgctgaaggtcccgggttacgaggagcccgtggaattcggg
gtcctggtggcgtttgcgtatgagctggagggggacggggaggggcctcgggaggagctg
gtcgtggccaccacgcgcctggagacgatgctgggggacgtggccgtggccgtgaacccc
gacgacccgcggtaccagcacctgcggggccgtcgggttcgtcacccgttcacggggcgg
agcctcccggtgctgcacgaccccttcgtggaccccgaattcgggacgggggcggtcaag
gtcacgccggcccacgacgccaccgactacgaggtgggacagagacacgggctggagatg
gtgacggtgatcggggacgacgggaccatgcagaacgtgcccgagccgttcctggggctg
ccgcggttctcggcgcgggcggcggtgctgggggcgctgcagcagcgcgggctgttccgg
ggggtcaccgagaaccccatggtggtgccgatctgcagccgctcgggggacgtgctggag
ccgctgctgaagccgcagtggtacctgcgctgcggggagctgggcgcggccgcgggcggg
gccgtgcgcgacgggcggctcaggctccgcccccccggccacgcccgcacctggttccag
tggatggacaacatccgggactggtgcatctcgcggcagctctggtggggccatcgcatc
ccggcctatttcgtcaccatcgaccagccccacacggcccccggggaggacaccgacggg
cggttctgggtcagcggccgcagccccgaggaggcgcgagaaaaagcggcggaaaaattt
ggggtgaaacccgaggaaatccagttgagacaagacgaggacgtgctggacacctggttt
tcctcgggcctcttcccgttctcagccctgggctggcccgagcagaccgaggatctcgcc
gtgttttatccggggtccctgttggaaaccggccacgacatcttgttcttctgggtggcg
cggatggtgatgttggggctggcgctgaccgggagggtcccgttcaaagaggtttacctc
cacgccatcgtccgcgacgcccacgggcggaaaatgagcaaatccctggggaacgtgatc
gaccccctggacgtgatcggggggatcgggctggaggagctgcaccagcagctgttgaac
agtaacctggagcctgcggagctggagagagcgagggaggggcagaaacgggattttccc
acggggatccccgagtgcggcaccgacgcccttcgcttcgccctctgcgcctacacggcc
cagggccgggacatcaacctggacgtggggcgggtcctgggctatcgtcacttctgcaac
aagatctggaacggggcgaagttcatcctgggggcgctgggaccccactacagacccccc
ccggggatccaggggcggggccgggcggggctggccgagcgctgggtccgcagccgcctg
gcccgggcggtcggggccgtgggagccgctctgggcgagttcgatttcccggcggccacg
acggcgatacacgggctgtgggtgtacgagctgtgcgacgtgtacctggaatgcgcgaag
ccggttctgtcccgcgcggccgccgagtcgggggacacggggggcgccccccgcgacccc
agtgaccccggggacgcccccgccgacccccccggcgacagcggcgacgccgcgtccgtc
agggacaccctgtacgtgtgtctgtccgtggggctgcggctcctggcccccttcatgccc
ttcgtcaccgaggagcttggcagcggctgccgccccccgacc
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