Caloenas nicobarica (Nicobar pigeon): 136000772
Help
Entry
136000772 CDS
T11056
Symbol
SKIC2
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136000772 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
136000772 (SKIC2)
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136000772 (SKIC2)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
136000772 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
136000772 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ubiquitin
MTR4_beta-barrel
Rad60-SLD
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
136000772
NCBI-ProteinID:
XP_065510801
LinkDB
All DBs
Position
35:complement(760920..788441)
Genome browser
AA seq
1127 aa
AA seq
DB search
MAEPPLDVLVKTLDSQTRSFQVEPEISVREFKSRIAPAVNIPPQQQRLIYQGRVLQDERS
LRDYDVGGKVIHLVERAPPPLPHPPPGGGGGAGGGGAGGGGPPQPRNPNSYVMVGTFNLP
IDGSSVDVHINMDQAPAQNEPRLRLLVAQQVLRDLQAVLGRLEWPFVPDPFQQRAVLSLE
RGHSVLVAAHTSAGKTAVAEYGIALGRRHLTRTIYTSPIKALSNQKFREFRETFGDVGLV
TGDVQLRPEASCLVMTTEILRSMLYNGSDVIRELEWVIFDEVHYINDEERGVVWEEVLIL
LPPHVKLILLSATVPNALEFAQWVGRTKRRRVRVLSTARRPVPLEHFLFLGGGAAAEATP
PAAEATPPLAEATPPGLFLLVDRWGTFHTQGYYAAVAAQKAQSSKHGPSCGARTPNPGGN
IAQARAVCLSLLSVLRSRGLLPAVVFSFSRGGCDALAQTLRGLDLVTSDERGRIRGLLRR
WLGRLRGGDRDLPQVVWLSELLQRGLGVHHGGLLPLLKEVVELLFSMGLLKVLFATETFA
MGVNMPARTVVFESLRKHDGSGFRDLLPAEYIQMSGRAGRRGLDATGTVIVLSRGPVPEL
GDLHRVLMGHPAPLQSRFRVTYSMLLNLLRVTGTSPMSPTRLMRRSFAEEPARRDAAAQS
RRVAELRAALGTLGDTEEPGGAMADLPLYHETVGTLRRARGQLNRRLAESPGGLRVLAPG
RVVIVSTPKHRNAPGLILQVTPGPPGPTFTVLVLSERRPEAGGGHDPPDVPDVPYPEDLL
LTRLFLPEGPCGPALEQLQPEDFGGVTTKTLRVNPQMLLQELRPPGGAPTGGMGGPRSPP
ATPLVTSTLQELQRLAGGGGAGGVPLLSPPLRDPDSVTLAATARDLGTSLGTFECVRSPR
FPQEFSQFAARQRLREELEQLEFRLSDQSLLMLPQYQQRMQVLQALGYVSPGGSLSLGGR
VAALLSSQELLLTELLLGNVLSPLRPEESAALLAATLGELRGDPPPRLPHSLLQAVARLR
AVAQRLGQLQQERGLPEGPEEALAQLGCGLVEPVYEWARGMPFGSVSRLSAAQEGTLVRC
LQRLDERLRQLRAAARLLGDPALAQRMEAAAAAVRRDVVLTPSLYTH
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atggcggagccgccgctcgacgtgctggtgaagacgttggactcgcagacccggagcttc
caggtggagcctgagatctcggtgcgcgagttcaagtcccgcatcgccccggctgtgaac
atccccccccagcagcagcgcctcatctaccagggccgggtcctgcaggacgagcggagc
ctccgcgattacgacgtggggggcaaagtgattcacctggtggaacgagccccccccccc
ctcccccaccccccccccggcggcggcggcggagccggagggggaggggcgggcgggggc
ggccccccccagccccgcaaccccaacagctacgtcatggtgggcaccttcaacctgccg
atcgacggctcctcggtcgacgttcacatcaacatggaccaggcgcccgcgcagaacgaa
ccgcggctgcggctgctggtggcccagcaggtgctgcgggacctgcaggcggttttgggg
cgtctggagtggccgtttgtccccgacccgttccagcagcgcgcggtgctgagcctggag
cgcggccactcggtgctggtggccgctcacacctcggccgggaaaacggccgtggccgaa
tacgggatcgcgctgggacggagacacctcaccaggaccatctacacgtcgcccatcaag
gcgctttccaaccagaagttccgcgagttccgcgagacgtttggggacgtgggtttggtg
acgggggacgtgcagctgcggccggaggcctcgtgtctggttatgacgaccgagatcctg
cgctccatgctgtacaacggctccgacgtgatccgcgagctcgagtgggtgattttcgac
gaggttcattatattaacgacgaagagcggggggtggtgtgggaggaggtgctgatcctg
ctgcccccccacgtcaaactgatcctgctcagcgccaccgtccccaacgccctcgagttc
gcccagtgggtcgggcgcacgaagcggcggcgggtccgcgtgctcagcaccgcgcgccgc
ccggtgccgctcgagcacttcctgttcctggggggcggggccgccgccgaggccacgccc
cccgccgccgaggccacgccccccctcgccgaggccacgccccccgggctgttcctgctc
gtggaccggtgggggacgttccacacccagggatactacgcggctgtggcggcacaaaag
gcccagagcagcaaacacgggccgagctgtggggcccggacccccaacccggggggcaac
attgcacaggcccgggccgtgtgtctgtccctgctgtccgtcctgcggtcccgggggctc
ctcccggccgtcgtgttctcgttctcgcgggggggctgcgacgcgctggcccagacgctg
cggggactcgacctggtgacgagtgacgagaggggacggatccgggggctcctgcggcgc
tggctggggagactgcgggggggggacagggacctgccgcaggtggtgtggctgtcggag
ctgctgcagcgggggttgggggttcaccacggggggctcctgccgctgctcaaggaggtc
gtggagctgctgttcagcatggggctgctcaaggtgctctttgccaccgagacgttcgcc
atgggggtgaacatgccggcccgaaccgtcgtgttcgagtctctgcgcaaacacgacggc
agcggcttcagggacctgctgcccgccgagtacatccagatgtcgggccgtgccggacgc
cggggtctcgacgccaccggcaccgtcatcgtgctgagccggggacccgtccccgagctg
ggggacctgcacagggtgctcatgggccacccggcccccctgcagtcgcgattccgcgtc
acctactcgatgctgctgaacctgctgcgggtgacggggacgtccccgatgtccccaacg
cggctcatgcgccgcagcttcgccgaggagccggcgcggagggacgcggcggcccagagc
cgccgcgtggccgagctgcgggcggccttggggacacttggggacacggaggagcccggg
ggggccatggctgacctgcccctgtaccacgaaactgtggggaccctgcggagagcgagg
ggacagctcaaccgccgtctggccgagtcaccgggggggctgcgggtcctggcccccggg
cgggtggtgatcgtgagcacccccaaacacaggaacgccccggggctcatcctgcaggtg
acccccggcccccccggccccacattcacggtgctggttctgagcgagagacgccccgag
gcgggggggggacacgacccccccgatgtccccgatgtcccctaccccgaggacctgctg
ctcacccgcctcttcctgcccgagggtccgtgcggccccgccctggagcagctgcagccg
gaggattttgggggggtcacaaccaagaccctgcgcgtgaacccccagatgctgctgcag
gagctgcggccccccgggggggctcccacaggtgggatgggggggccccggtcccccccg
gccacccccctggtgacctcgacgctgcaggagctgcagcggctggcgggggggggcggg
gcggggggggtccccttgttgtcccccccgctgcgcgaccccgactcggtgaccctggcg
gccaccgcccgggacttggggacctcgctggggacgttcgagtgcgtgaggagcccccgg
ttcccgcaggagttctcccagtttgcggcgcggcagcggctgcgggaggagctggagcag
ctggagttccggctgtccgaccagtccctgctcatgctgccccagtaccagcagcgcatg
caggtgctgcaggctctgggctacgtgtcgccgggggggtcgctgtccctggggggccgc
gtggccgccctgctgtcctcgcaggagctgctgctgaccgagctgctgctggggaacgtg
ctgagccccctgcggcccgaggagagcgcggccctgctggccgccaccctgggggagctc
cggggggacccgcccccccgcctgccccacagcctcctgcaggccgtggcccggctgcgc
gcggtggcgcagcgcctggggcagctgcagcaggagcgggggctccccgagggccccgag
gaggcgctggcccagctgggctgcggcctcgtggagcccgtgtacgagtgggcgcgcggc
atgccgttcggctccgtgtcgcgcctgtcggcggcgcaggaggggacgctggtgcggtgc
ctgcagcgcctggacgagcggctgcggcagctgcgggcggccgcgcggctgctgggcgac
ccggcgctggcacagaggatggaggcggcggccgccgccgtgcgcagggacgtggtgctc
acccccagcctctacacacactga
DBGET
integrated database retrieval system
