Caloenas nicobarica (Nicobar pigeon): 136000780
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Entry
136000780 CDS
T11056
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like isoform X1
KO
K18735
protein SMG9
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
136000780
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
136000780
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Gene cluster
GFIT
Motif
Pfam:
URGCP_GTPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
136000780
NCBI-ProteinID:
XP_065510807
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Position
35:complement(73040..87491)
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AA seq
473 aa
AA seq
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MSDSAHSPAPGGRRRWTREKEPEREGEEPAGLLPKTPIILAKPPGERQPQPKAGPAPAPP
PPAPPIVLMKSRGEGEGRGPGGGASAAGGEGPALAPPREREGPRPTQPVYQLHGRGLGAP
LALDPATAQSRLAALEKMKTSIKLVDEQMNWCDCALQFLLEQTDVLVVGALGLQGTGKST
VLSLLAGNQPEDDPRTYVFRAAPPELRQRAAAQTGGIDLFVTQERVVLLDTQPILSPALL
DHLINNDRKLPPEYGLPHSYVEMQSLQIAAFLFTVCHVVLLVQDWFTDPLIYRFLQTAEM
VKPPGPAPSAGPAHDGPDDPPEFNPHLDPRAVFVQTRARPESFSPRRLREMQRVLETLME
HSHLKFKGSLSMLDPPPEGEVNLFLLPPLEEESEDPPPRAGGGGAPLFPALPPFRGAPCW
PLLTRLRGRVLGAARAQLAPSLLTERNWFHYAARIWDGVKKSSALAEYGRLLG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactccgcgcacagcccggccccgggcggccggcgccgctggacgcgggaaaag
gagccggagcgggagggggaggagccggcggggctgctgccgaaaacgccgattatcctg
gcgaagccgccgggagagcggcagccgcagccgaaggcgggacccgcgccggccccgccc
cccccggccccgcccatcgtgctgatgaagtcacgtggcgagggggaggggcggggcccg
gggggcggggcctcggccgcggggggggaggggccggcgctggccccgccccgcgagagg
gaggggccgagacccacccagcctgtctatcaactgcatgggcggggcctgggggcgccc
ctggcgctggacccggccacagcccagtcccgcctggcggcgctggagaagatgaaaacc
agcatcaaactggtggacgagcagatgaactggtgcgactgcgccctgcagttcctgctg
gagcagacggacgtgctggtggtgggagcgctggggctgcagggcaccgggaaatccacc
gtgctgtccctgctggccggaaaccagcccgaggacgacccgcgcacgtacgtcttccgg
gccgcgccgccggaactacgtcagcgcgccgcggcccagaccggcgggatcgacctgttc
gtgacccaggagcgggtggtgctgctggacacccagcccatcctgagccctgccctcctg
gaccatctaattaacaacgaccgcaaattaccccccgagtacgggctgccccacagctac
gtggagatgcagtccctgcagatcgcggcgttcctgttcaccgtgtgccacgtggtgctg
ctggtgcaggactggttcacagacccactgatctataggttcctgcaaacggccgagatg
gtgaagcctccgggccccgcccccagcgccggccccgcccacgacggccccgacgacccc
cccgagttcaacccccacctggatccccgcgcagtgttcgtgcagacccgcgcgcgcccc
gagagcttcagcccccggcggctgcgggagatgcagcgagtgctggagaccctgatggag
cattcgcacctcaagttcaaggggtcgctgtcgatgctggacccgcccccggagggcgag
gtcaacctgttcctgctgccgccattggaggaagagagcgaggacccgccccccagggcc
ggggggggcggggcgccgctgtttcccgcgctgcccccgttccgcggcgccccctgttgg
ccgctgctgacccggctccgcgggcgcgtcctgggggcggcgcgagcgcaactggcgccc
agtttgttaacggagcggaactggttccattacgccgcccggatctgggacggggtgaag
aaatcgtcggccctggccgagtacgggcgcttactgggctaa
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