Caloenas nicobarica (Nicobar pigeon): 136000818
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Entry
136000818 CDS
T11056
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03013
Nucleocytoplasmic transport
cnic03015
mRNA surveillance pathway
cnic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136000818
09122 Translation
03013 Nucleocytoplasmic transport
136000818
03015 mRNA surveillance pathway
136000818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
136000818
03041 Spliceosome [BR:
cnic03041
]
136000818
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136000818
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
136000818
Spliceosome [BR:
cnic03041
]
Complex C
Other components
EJC/TREX
136000818
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
136000818
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
136000818
NCBI-ProteinID:
XP_065510878
LinkDB
All DBs
Position
35:complement(791951..804704)
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAAGGDGAEVPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQXYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggacaacgagctgctggactatgaggacgacgaggtggagaac
gcggccgggggggacggggccgaggtgccccccaaaaaggacgtgaagggctcgtacgtg
tccatccacagctccggcttccgcgacttcctgctcaaacccgagctgctccgcgccatc
gtggactgcggcttcgagcacccctccgaagtgcagcacgagtgcatcccgcaggccatc
ctgggcatggacgtgctgtgccaggccaagtccggtatgggcaaaacggccgttttcgtg
ctcgccacgctgcagcaactggaaccagtcaccgggcaggtgtcggtgctggtgatgtgt
cacacgcgggagctggcgttccagatcagcaaggagtacgagcgtttctccaagtacatg
cccagcgttaaggtgtcggtatttttcggggggctctccatcaagaaggacgaggaggtg
ctgaagaaaaactgtccccacgtggtggtggggacgcccgggcggatcttggccctggcg
cggaacaagagcctcaacctcaagcacatcaaacacttcatcctggacgagtgcgacaag
atgctcgagcagctcgacatgcgccgggacgtccaggagattttccgcatgaccccgcac
gaaaagcaggtcatgatgttcagcgccacgctcagcaaggaaatccgccccgtctgccgc
aaattcatgcaagaccccatggagatctttgtggacgacgagacgaagctgacgctgcat
gggctgcaancatattacgtgaagctgaaggacaacgagaagaaccgcaaactgttcgac
ctgctcgacgtcctggagttcaaccaggtggtgattttcgtcaagtcggtgcagcgctgc
atcgcgctggcgcagctgctggtggagcagaacttcccggccatcgccatccaccgcggg
atgccccaggaggagcggctctcgcggtaccagcaattcaaggatttccagcggcgcatc
ctggtggccacgaacctgtttgggcgcgggatggacatcgagagggtgaacatcgcattc
aactacgacatgcccgaggattccgacacctacctgcaccgggttgcccgcgcggggcgt
ttcggcaccaagggcttggccatcacgttcgtgtcggacgagaacgacgccaagatcctc
aacgacgtgcaggatcggttcgaggtcaacatcagcgaactgcccgacgagatcgacatc
tcctcctacatcgagcagacccgataa
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