Caloenas nicobarica (Nicobar pigeon): 136000847
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Entry
136000847 CDS
T11056
Symbol
LSM2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03018
RNA degradation
cnic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136000847 (LSM2)
09123 Folding, sorting and degradation
03018 RNA degradation
136000847 (LSM2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
136000847 (LSM2)
03041 Spliceosome [BR:
cnic03041
]
136000847 (LSM2)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136000847 (LSM2)
mRNA degradation factors
5'-3' decay
Lsm complex
136000847 (LSM2)
Spliceosome [BR:
cnic03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
136000847 (LSM2)
Complex C
U2 snRNP components
136000847 (LSM2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
136000847
NCBI-ProteinID:
XP_065510916
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All DBs
Position
35:complement(805939..809396)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVRNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgctgttctactcgtttttcaagtcgctggtggggaaggacgtggtggtggagctgaag
aacgacctgagcatctgtgggaccctccactctgtggatcagtacctgaacatcaaactg
accgacatcagcgtgaccgaccccgagaaatatccacacatgctgtccgtccgcaactgc
ttcatccgcggctccgtcgtgcgctacgtgcagctcccggccgacgaggtggacacgcag
ctgctgcaggacgccgcccgcaaggaggcgctgcagcaaaaacagtga
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