Caloenas nicobarica (Nicobar pigeon): 136000854
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Entry
136000854 CDS
T11056
Symbol
VARS2
Name
(RefSeq) LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
136000854 (VARS2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
cnic01007
]
136000854 (VARS2)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cnic03016
]
136000854 (VARS2)
Enzymes [BR:
cnic01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
136000854 (VARS2)
Amino acid related enzymes [BR:
cnic01007
]
Aminoacyl-tRNA synthetase
Class I (U)
136000854 (VARS2)
Transfer RNA biogenesis [BR:
cnic03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
136000854 (VARS2)
Prokaryotic type
136000854 (VARS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
tRNA-synt_1g
tRNA-synt_1_2
tRNA-synt_1e
TcpQ
tRNA-synt_1b
tRNA-synt_1f
Motif
Other DBs
NCBI-GeneID:
136000854
NCBI-ProteinID:
XP_065510925
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All DBs
Position
35:1007116..1046958
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AA seq
1102 aa
AA seq
DB search
MAAPTLLRALRSVSPRALRPPRDLGTPRGFLGTPRARSSGATPGAPSGDPEQRRLRAREH
KEKRQRLRREREELGGGGEKVPPPPPKGWSPKPVVEYEHPLEPDGKKATGVPLPPAYSPR
YVEAAWYGWWERXGFFTPPEKPAGGAAPVLSLVLPPPNVTGSLHLGHALGVALQDVLVRW
HRMQGWTVLWLPGTDHAGIATQAVVERWLWQQRGLRRQDLSPDQFLAAVWDWKQRHGDEI
LQQLRALGASLDWSRCTFTMDPGFSGAVTEAFVRLHRDGLIRRDRRLVSWSCALQCALAD
IEVEPRVLTGPTSLRVPGCPQPVTFGVLVTIAYPVEGSDDLEVPVATTRPETILGDVAVA
VNPADPRYTHLHGRRLRHPITGQLLPLVTDPSVEPDRGTGAVKVTPAHSPQDLLLAQAHG
LPVVTVIGDDGTLCPPAGEWLQGVHRFAARPLVLAALAERGLFRGSQDHAMTLPLCSRSG
DVVEYQLKSQWFLRCREMAERAREAVTSGRLQLVPKFHEKNWKTWMDNVGDWCLSRQLRW
GHRVPAFRAAPPGGPVPAEGPWLVGASEAAARAAAARALRCPPHAVQLHQDPDVLDTWFS
SALFPFAALGWPHQGPDFGRFYPNNLLVTGSDLLFFWVSRMVMLGLQLTGQLPFTKVLLH
SLVRDAHGRKMSKSLGNVIDPRDVIAGATPQELRERLSRRGLDPRELALATEGQRRQFPH
GIPECGADALRMALCAHNVHGAAVRLSVPAVLSQRRFCNKVWNALRLVLGTLRPGEPPRD
PLQLHVEDPMSRWVLSRLAHSALEASRALAALELQGALLAVQTFWLRSFCDVYLEVSKPR
LHAADTRATLATCADLGLRLLGPFAPFLAEELWQRLPRPPGAPPTLGHAPFPDHAQLAHW
RNPQLEAEVAAMLEVARAARGLRDVFRLGGARPPVAVRCAAPARDWLPALGPALQVLAGA
GPLQLLPPGAGPPPGPGWVGAPAGSQSHVFLRLQGLLDPSAARAQLQTRVLGLQRRLRGI
QGTQASGGTQASGEGTQVSGNGTQASGEAPAPSAKHQQVAVLRAELARLAQALRALDGDP
GVREDPGVQEGDPGVRGDPAPQ
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccacgctgcttcgcgccctccgctccgtgtccccccgggccttgcgcccc
ccccgggatttggggaccccccgaggttttttggggaccccccgggcccggagcagcggg
gcgacccccggggctccctcaggggaccccgagcagaggcggctccgcgcccgggagcac
aaggagaagcggcagcggctgcggagggagagggaggagctggggggcggcggcgagaag
gtgccaccgcccccccccaagggctggagccccaaacctgttgtggaatatgagcacccg
ctggagcccgacggcaagaaagccacgggggtgccgctgccccccgcctacagcccgcgc
tacgtggaggccgcctggtacggctggtgggagcggngggggttcttcacccccccggag
aagccggcggggggggcggcgccggtgctgagcctggtgctgcccccccccaacgtcacc
ggctccctgcacttgggccacgcgctgggggtggcgctgcaggacgtgctggtcagatgg
caccgcatgcagggctggacggtgctgtggctgccggggaccgaccacgcggggatcgcc
acccaggcggtggtggagcgctggctgtggcagcagcgggggctgcggcgccaggatctt
tcccccgaccagttcctggcggccgtttgggactggaaacagcggcacggggacgagatc
ctgcagcagctgcgggcgctgggggcgtcgctggattggagccgctgcacgttcaccatg
gaccccggtttctcgggggcggtgaccgaggcctttgtgcggctgcaccgggacgggctg
atccggcgcgaccggcgcctggtgagctggagctgcgccctgcagtgcgcgctggccgat
atcgaggtggagccgcgggtgctgacgggccccacgtcgctgcgtgtccccggctgtccc
caacccgtcaccttcggtgtcctcgtcaccatcgcctaccccgtggagggctcggacgac
ctggaggttcccgtcgccaccactcgccccgagaccatcctgggggacgtggccgtggcc
gtgaaccccgccgacccgcgctacacgcacctgcatgggcgccgcctgcgtcacccaatc
acggggcagctgctgccgctcgtcaccgaccccagtgtggagcccgaccggggaactggc
gcggtgaaggtgaccccagcacacagtccccaggacctgctgctggcccaggcccacggg
ctgcccgttgtcaccgtcatcggggacgatggcaccttgtgtcccccggccggggagtgg
ctgcagggcgtccaccgtttcgcggcgcgtcccctggtgctggcggctctggccgagcgg
gggctgttccggggcagccaggaccacgccatgaccctccccctctgcagccgctccggg
gacgtcgtcgagtatcagctcaagagccaatggttcctgcgctgccgagaaatggccgag
cgcgcgcgggaggccgtgacgtccgggcggctccagctcgtccccaagtttcacgagaag
aactggaagacgtggatggacaacgtgggggactggtgcctgtcgcggcagctgcgctgg
ggtcaccgcgtccccgcgttccgggcggcgccgccggggggtcccgtcccggccgagggg
ccgtggctggtgggagccagcgaggccgccgcccgagcggccgccgcccgcgccctgcgc
tgccccccgcacgctgtgcagctgcaccaggaccccgacgtgctggacacctggttctcc
tcggcccttttccccttcgccgccctgggttggccccaccagggtcccgatttcgggcgg
ttttaccccaataatttgctggtgaccgggagcgacctcctgttcttctgggtgtcgcgc
atggtgatgctggggctgcagctcacgggacagctgcccttcacgaaggtcctcctgcac
tccctggtccgcgacgcccacggccgcaagatgagcaaatccctggggaacgtcatcgac
ccccgcgacgtcatcgccggggccaccccccaggagctgcgggagcggctgagccggcgc
ggcctcgacccccgcgagctggcgctggccaccgagggacagcggcgacagttcccccac
gggatccccgagtgcggcgccgacgcgctgaggatggcgctgtgcgcacataacgtgcac
ggtgccgccgtccgtctgtccgtcccggccgtgctgtcccagcgccgcttctgcaacaag
gtgtggaacgccctgcgcctcgtgctggggaccctgcgccccggggagcccccccgggac
cccctgcagctccatgtcgaggatcccatgtcccgctgggtcctgtcccgcttggcccat
tcggctctggaggcgtcgcgggcgctggcggcgctggagctgcagggggcgctgttggcc
gttcagaccttctggctgcgaagcttctgcgacgtctacctggaggtgtccaagccccgt
ctgcacgcggcggacacgcgggcgacgctggcgacgtgcgcggacctggggctgcggctc
ctgggccccttcgcccccttcctggccgaggagctttggcagcgcctgccccgccccccc
ggggccccgcccaccctgggccacgcccccttccccgaccacgcccagctggcccattgg
cgcaacccgcagctggaggccgaggtggcggccatgctggaggtggcgcgggcggcgcgg
ggcctgcgcgacgtcttccgcctgggcggggcccggccccccgtggccgtgcgctgcgcc
gccccggcgcgtgattggctgcctgcgctgggccccgccctgcaggtgctggcgggggcg
gggccgctgcagctcctccccccgggggcggggcctccgccggggcccggctgggtgggg
gcgccggccgggagccagagccacgtgttcctgcggctgcagggcttattggacccatcg
gccgctcgggcccaactccaaacgcgcgtcctcggcctccagcggcgcctgcgcggcatc
caggggacccaggcgtccggggggacccaggcgtccggggaggggacccaggtgtccggg
aatgggacccaggcgtccggggaggcccccgccccctccgccaagcaccagcaggtcgcc
gttctccgcgcagaactcgcccgattggcccaagcgctgcgggcgctggatggggaccca
ggcgtccgggaggacccaggtgtccaggaaggggacccaggcgtccggggggaccccgcc
ccccaataa
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