Caloenas nicobarica (Nicobar pigeon): 136000860
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Entry
136000860 CDS
T11056
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136000860 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnic03041
]
136000860 (DHX16)
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136000860 (DHX16)
Spliceosome [BR:
cnic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
136000860 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
Rad17
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
136000860
NCBI-ProteinID:
XP_065510935
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All DBs
Position
35:1086449..1125430
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AA seq
1040 aa
AA seq
DB search
MAALERWVSAQLQALLGMSGRHVPAFLVALARRSRSPDELLERLRETEALRAEEPRVREF
ARELWGKVPREAPAEPPARAAERAALELQLRNRRYRLVESDEEEEPHGGPAPAMAAARRR
HLRPRRPESPEPAGASAPTGCAEPPEEPPEEPPEPPEEPEAEWEASERERLRDLAERDAF
AERLRRRDRDRTRHPGRPENKAYEEAQKRLKIAEEDQKKMVPELRKRSRREYLAKREQDK
LEELEAEIQDEEQLFGEESLSLPERRELQRKRLLRDLAREYQRAGERERMEKSQRYRIPE
ERRDKTIPEREEPPAGGEDPAAPRDEQRRWEEERIGAAALKFGARDRPPPKNYDFVLEDD
EMIQFVSSAQLEGTEPPKEEVPVPDSRWHSAQRARQALPIFPFREQLLAAIAEHQILVIE
GETGCGKTTQIPQYLHEEGYTRGGQKIGVTQPRRVAAMSVAARVALEMGTKLGNEVGYSI
RFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVLMVDEAHERSLHTDVLLGLLKDVAR
FRPQLKVLVASATMDTQRFSTFFGDAPVFRVPGRRFPVDIYYTKAPEADYLEACVVSVLQ
IHVTQPPGDILVFLTGQEEIEACVELLQERCRRLGSRLPELLVLPVYANLPSDVQARIFQ
PTPPGARKVVVATNIAETSVTIDGIVYVLDAGFCKQKSYSARTGMESLVVTPCSRASANQ
RAGRAGRVAPGKCFRLYTAWAFQHELEETPVPEIQRTDLGALVLLLKSLGINDLIHFDFL
DPPPHETLVLALEQLYALGALNHLGELTTLGRRMAELPVEPMLAKMILASEQYGCTDEVL
SVAAMLSVNNAVFYRPKDKGLHADSARAAFYRPGGDHLVLLNVYEQWVSSGHSVQWCYEH
FVQARSLRRARDVREQLDGLRERVELPPSSCNGDSVLVRKAITAGFFYHTARLTRGGYRT
VKHQQPVFIHPNSCLFTEQPRWLLYHELVFTTKEFMRQVIEIESAWLLEVAPHYYQAKEL
EDASGRKMPKKVGKSRDELG
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggagcgctgggtgtccgcgcagctgcaggcgctgctggggatgagcggc
cgccacgtccccgccttcctggtggcgctggcgcggcggagccgcagcccggacgagctg
ctggagcggctgcgggagacggaggcgctgcgggccgaggagccgcgggtccgcgagttc
gcgcgggagctgtggggaaaggtgccgcgggaggccccggcggagcccccggcccgggcg
gccgagcgggcggcgctggagctgcagctgcgcaaccgccgctaccgattggtggagagc
gacgaggaggaggagccgcacggaggccccgcccccgccatggccgccgcccggcgccgc
cacctgcgcccccgacgccccgagtcccccgagcccgccggggcctccgcgccaaccggg
tgcgcggagccccccgaggagccccccgaggagccccccgagccccccgaggagcccgag
gccgagtgggaggcgtcggagcgcgagcggctgcgggacctggccgagcgcgacgccttc
gccgagcggctgcggcggcgcgaccgcgaccgcacccggcacccggggcgccccgagaac
aaggcctacgaagaagcccagaaacgcctcaaaatcgctgaggaggatcaaaaaaagatg
gtccctgagctccgcaaacgctcccgccgcgagtacctggcgaagcgcgagcaggacaag
ctggaggagctggaggccgagatccaggacgaggagcagctgttcggggaggagtcgctg
tcgctgcctgagcggcgcgagctgcagcgcaagcggctgctgcgggacctggcgcgcgag
taccagcgcgccggggagcgggagcgcatggagaagagccagcggtaccgcatacccgag
gagcggcgcgacaagacgatcccggagcgcgaggagccccctgcgggcggggaggacccc
gcggcgccgcgggacgagcagcggcgctgggaggaggagaggatcggggcggccgccctc
aaattcggggcgcgcgaccgcccgccccccaagaactacgacttcgtgctggaggacgac
gagatgatccagttcgtcagctccgcgcagctcgaggggaccgaacccccaaaggaggag
gtcccggtccccgattcgcggtggcactcggcccagcgcgcccgccaggctctgcccatc
ttcccgttccgggagcagctgctggcggcgatcgccgagcaccagatcctggtgatcgag
ggggagacgggctgcgggaaaaccacccagatcccccaatacctgcacgaggagggttac
acgcggggggggcagaagatcggggtgacgcagccgcgacgcgtggccgcaatgagcgtg
gccgccagggtggccctggagatggggaccaagctgggcaacgaggtggggtacagcatc
cgcttcgaggactgcacgtcggagcgcacggtgctcaagtacatgacggacgggatgttg
ctgcgggagttcctgaccgagcccgacctggcgtcatacagcgtgctgatggtggacgag
gcccacgagcgctcgctgcacacggacgtgctgctggggctgctcaaggacgtcgcgcgg
ttccggccgcagctcaaggtgctggtggcctcggccaccatggacacccagcgcttctcc
accttcttcggcgacgcgcccgtgttccgtgtgcccgggaggcgcttccccgtggacatc
tactacaccaaggcgcccgaggccgattacctggaggcgtgtgtggtgtcggttctgcag
atccacgtcacccagccccccggggacatcctggtcttcctcaccggccaggaggagatc
gaggcgtgcgtggagctgctgcaggagcgctgccgccgcctgggctcgcgcctgcccgag
ctgctggtgctgcccgtctatgccaacctgccctcggacgtgcaggcgcggatcttccag
cccacgccgcctggcgcgcgcaaggtggtggtggccaccaacatcgcggagacgtcggtg
acgatcgacgggatcgtgtacgtgctggacgccgggttctgcaagcagaagagctacagc
gcgcgcaccggcatggagtcgctggtcgtcaccccctgctcacgggcctcggccaaccag
cgcgcggggcgcgcggggcgcgtggcccccgggaagtgtttccgtctctacacggcctgg
gcttttcagcacgagctggaggagacgccggtgcccgagatccagcgcacggacctgggc
gccctcgtgctgctgctcaagagcctcgggatcaacgacctgatccacttcgacttcctg
gacccgccgccccacgagacgctggtgctggcgctggagcagctctacgcgctgggggcc
ctgaaccacctcggggagctcaccacgctgggccggcgcatggcggagctgccggtggag
cccatgttggccaagatgatcctggcatccgagcagtacggctgcacggacgaggtgctg
tcggtggccgcgatgctgtcggtgaacaacgccgtgttctaccggcccaaggacaagggg
ctgcacgcggacagcgccagggccgccttctaccggcccggcggggaccacctggtgctg
ctcaacgtctacgagcagtgggtgtcgagcgggcactcggtgcagtggtgctacgagcac
ttcgtgcaggcgcgttccctgcgccgggcgcgcgacgtgcgcgagcagctggacgggctg
cgggagcgcgtggagctgccgccctcctcctgcaacggcgactccgtgctggtccgcaag
gccatcaccgccggcttcttctaccacacggcgcggctgacgcgcggcggctaccgcacc
gtcaagcaccagcagccggttttcatccaccccaacagctgcctgttcaccgagcagccg
cgctggctgctctaccacgagctggtgttcaccaccaaggagttcatgagacaggtgatc
gagatcgagagcgcgtggctgctggaggtggctcctcattactaccaggccaaggagctg
gaggacgcgagcggccgcaagatgcccaagaaggtggggaagagccgggacgagctgggc
tga
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