Caloenas nicobarica (Nicobar pigeon): 136000916
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Entry
136000916 CDS
T11056
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136000916 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnic03019
]
136000916 (XAB2)
03041 Spliceosome [BR:
cnic03041
]
136000916 (XAB2)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
136000916 (XAB2)
Spliceosome [BR:
cnic03041
]
Complex B
Other components
Prp19-related factors
136000916 (XAB2)
Complex C
136000916 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_19
TPR_12
TPR_2
Suf
TPR_8
TPR_7
TPR_15
ARM_TT21_C
ARM_TT21
PPR
TPR_1
Motif
Other DBs
NCBI-GeneID:
136000916
NCBI-ProteinID:
XP_065510988
LinkDB
All DBs
Position
36:complement(1127006..1329010)
Genome browser
AA seq
1080 aa
AA seq
DB search
MADAAEVAAPPGPGAEPGMEPGMEPGMEPEMELELEMEPEPGAAPGPEPGPGVEMEAEPE
RPELSFEEEEVPHEEELLRNPFSVRCWLRYAQARGTGPRHRLNLLYERALRQLPGSYKLW
YRYLRLRRLQVKGRCPTDPAFEEANAVHERALVFMHKMPRIWLDYCQFLVSQGRVTRTRR
TFDRALRALPVTQHHRLWPPFLSFVRSHPLPETALRVFRRYLKLCPEGAEQYVGYLVSVG
RLDEAAQRLARLVNDERFVSREGKSNYQLWQELCDLLSQHPERIRSLDAGSIIRGGLTRF
TDQLGRLWGALADCYIRSGHFEKARDVYEEAVQTVMTVRDFTQVFDSYAQFEESVIAARM
ETAAELGRDEDGEVELELRLARFERLMSRRPLLLNSVLLRQNPHNVHEWHKRVQLYQGHP
QQIISTYTEAVRTVDPQKATGRPHGLWVAFARFYEDNGQLEDARTILTKATRVRFRRVED
LAAVWCEFGEMELRHHNYQEALSILRRATALPARRAEYFDSSEPVQNRLYKSLKVWAMLA
DLEESLGTFQSTRAVYERILDLRIATPQIVINYGLFLEEHGYFEESFKAYERGIALFRWP
HVADIWHTYLTKFVARYGGRKLERARDLFEQALDGCPPRYAKTIFLLYAGLEEQFGLARH
AMAVYDRATRAVLPAQQSDMFNIYIRRAAELYGVTHTRPIYQKAIEVLGDDAARELCLRF
ADMECKLGEVDRARAIYTYCAQICDPRITGTFWQTWKEFEIRHGNEDTIRELLRIKRSVQ
ATYNTQVNFMASQMLKAHGSGTAADGGPAALDQMQQLERRAGQLAAEAQRDQPRPQGHGA
VRQVGTVPATTRHPDTRHPDTRHPDTRHPDTRHTDTRHPDTRHPRHLSPRHPSPRHPSPR
HPSPRHALPRHPSPRHPHLDIHHPDTRHPDTRHPDTRPHDIHPPDTRHPDTRHPDICHPD
THCPDTCHPNTHHPDTHRPDICHPDICHPDTRHPDICHPDTRHPDTRHHDICYPDICHPD
TRHPDTCHPRRSGGRAPAALSQQGNPDEIDLGDEDEAEPDEVQLEQKRVPASVFGGLKDD
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcggcggaggtggcggcgccgccggggcctggagccgagccggggatggag
ccggggatggagccggggatggaaccggagatggagctggagctggagatggagccggag
ccgggagcggcccctgggccggagccggggcctggagtggagatggaggcggagccggag
cggcccgagctgagctttgaggaggaggaggttccccacgaggaggagctgctccgcaac
cccttctccgtgcgctgttggctccgctacgcgcaggcccgggggacggggccgcggcac
cggctgaacctgctctacgagagggccctgcggcagctgcccggcagttacaagctgtgg
taccggtacctgcggctgcggcggctccaggtcaaaggtcgctgccccacggaccccgcg
ttcgaagaggccaacgccgtccacgagagggcactcgtgttcatgcacaagatgccgcgg
atctggctggattactgccagttcctggtgtcccagggccgggtgacgcgcacccgccgc
acgttcgaccgggcgctgcgggcgctgccggtcacccagcaccaccggctctggccgccg
ttcctcagcttcgtgcgcagccaccccctgcccgagaccgccctgcgcgtcttccgcaga
tacctcaagctgtgccccgagggcgccgagcagtacgtggggtacctggtgtccgtgggg
cgcctggacgaggccgcgcagcgtctggcccggctggtgaacgacgagcggttcgtgtcc
cgcgaggggaaatccaactaccagctgtggcaggagctgtgtgacctgctgtcccagcac
cccgagcggatccgctcgctggacgccggctccatcatccggggggggctcacgcgcttc
acggaccagctgggccggctctggggggccctggccgactgctacatccgcagcggccac
ttcgagaaggcgcgggacgtgtacgaggaggccgtgcagacggtgatgacggttcgggac
ttcacccaagtgtttgacagctacgcccagttcgaggagagcgtcatcgcggcaaggatg
gagacggcggccgagctgggccgggacgaggacggggaggtggagctggagctgcggctg
gcgcggttcgagcggctcatgtcccggcggccgctgctgctcaacagcgtccttctgcgc
cagaacccccacaacgtgcacgagtggcacaagcgcgtccagctctaccagggccacccc
cagcagatcatcagcacgtacaccgaggccgtgcgcaccgtggacccgcagaaggccacg
ggccggccccacgggctctgggtggctttcgcccgcttctacgaggacaacgggcagctg
gaggacgcccgcaccatcctgaccaaggccacccgcgtgcggttccgccgcgtcgaggac
ctggcggctgtttggtgcgagttcggcgagatggagctgagacaccacaactaccaggag
gccctgagcatcctgcggcgagccactgcgctgcccgcgcgccgcgctgagtacttcgac
tcctcggagcccgtccagaaccggctctacaagtccctgaaggtctgggccatgctggcc
gacctggaggagagcttggggacattccagtccacccgagcggtgtacgagcgcatcctg
gacctgcgaatcgccaccccccagatcgtcatcaactacgggctgttcctggaggagcac
ggctacttcgaggagagcttcaaggcgtacgagcgcgggatcgcgctgttccggtggccg
cacgtggccgacatctggcacacgtacctcaccaagttcgtggcgcgttacggcggccgg
aagctggagagagcgcgggacctgttcgagcaggcgctggacggctgccccccccgctac
gccaagacgattttcctgctgtacgcggggctggaggagcagttcgggctggcccgtcac
gccatggccgtgtacgaccgggccacgcgcgcggtgctgccggcgcagcagagcgacatg
ttcaacatctacatccggcgcgcggccgagctctacggcgtcacccacacccggcccatc
taccagaaggccatcgaggtgctgggtgacgacgcggcgcgggagctttgcctgcgcttc
gccgacatggagtgcaagctgggggaggtggatcgcgcccgcgccatctacacctactgc
gcccagatctgcgacccccgcatcacgggcacgttctggcagacgtggaaggagttcgag
atccgccacgggaacgaggacacgatccgggagctgctgcgcatcaagcgcagcgtccag
gccacctacaacacccaggtcaacttcatggcctcgcagatgctcaaggcccacggcagc
ggcaccgccgcggacggtggccccgctgccctggaccagatgcagcagctcgagcgccgc
gcggggcagctggcggccgaggcccaaagggaccaaccgcggccccagggacacggtgca
gttcgtcaggtggggaccgtccccgcgaccacccgtcaccccgacacccgtcaccccgac
acccgtcaccccgacacgcgtcaccccgacacccgtcacaccgacacccgtcaccccgac
acccgtcacccccgacacctgtcaccccgacacccgtccccgcgacacccgtcaccgcga
cacccgtcaccccgacacgcgttaccccgacacccgtcaccccgacaccctcacctcgac
atccatcaccccgacacccgtcaccccgacacccgtcaccccgacacccgtccccacgac
atccatccacccgacacccgtcaccccgacacccgtcaccccgacatctgtcaccccgac
acccattgccccgacacctgtcaccccaacacgcatcaccccgacacccatcgccccgac
atctgtcaccccgacatctgtcaccccgacacccgtcaccccgacatctgtcaccctgac
acccgtcaccctgacacccgtcaccacgacatctgttaccccgacatctgtcaccctgac
acccgtcaccccgacacctgtcacccccggcggagcggggggagggctccggccgccctg
tcccaacaggggaacccggacgagatcgacctgggggacgaggacgaggccgaacccgac
gaggtgcagctggagcagaagcgcgtcccggcctcggtcttcggggggctcaaggacgac
tga
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integrated database retrieval system
