Caloenas nicobarica (Nicobar pigeon): 136001101
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Entry
136001101 CDS
T11056
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
136001101 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnic03021
]
136001101 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
cnic03019
]
136001101 (SUPT5H)
Transcription machinery [BR:
cnic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
136001101 (SUPT5H)
RNA polymerase I system
136001101 (SUPT5H)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
136001101 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
136001101
NCBI-ProteinID:
XP_065511235
LinkDB
All DBs
Position
37:complement(229664..242749)
Genome browser
AA seq
1073 aa
AA seq
DB search
MSDSDDSNFSEDESERSSEAEEAEAEEERASEKEEEEEEEEEEYDEEEEEEDDDRPAKKP
RHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRLQNLWR
DQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEER
ATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRVGYW
NQQMVPIKEMTDVLKVVKEVTNLKPKAWVRLKRGIYKDDIAQVDYVEPSQNQISLKMIPR
IDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKG
FLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCE
GELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRYEGDTG
LIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVI
VRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGR
EGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAPMSPRIS
SPMHPSGAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVE
LHSTCQTISVDRQRLTTVGSRRPGGGMTSSYGRTPMYGSQTPMYGSGSRTPMYGSQTPLH
DGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGT
PNPQTPGYPDPSSPQVTQPYNPQTPGTPAMYNTEQFSPYAVPSPQGSYQPSPSPQSYHQV
APSPVGYQNSHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQ
NSSDWVTTDIQVKVKDTYLDSQAVGQTGVIRSVTGGMCSVYLKDSEKVVSISSEHLEPVT
PTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLEEQLKILNLRFLGKLLEA
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgacgacagcaatttctcggaggacgagagcgagcgcagcagcgaggcc
gaggaggccgaggccgaggaggaacgtgccagcgagaaggaggaggaggaggaggaagag
gaggaggagtacgatgaagaggaggaggaggaagacgatgaccgacctgccaagaaaccc
cggcacggcggcttcatcctggacgaggccgatgtcgacgatgagtacgaggatgaagat
cagtgggaagatggagccgaggacattctggagaaagaagagatcgaagcctccaacatt
gacaacgtggttctggacgaggatcgatcgggagcgcgacggctgcagaacctctggagg
gaccagcgcgaggaggagctgggggaatattacatgaaaaaatacgccaagtcctcagtg
ggagaaaccgtttacggcggctccgacgagctctcggacgacatcacccaacagcagctg
ctgccgggggtcaaggacccgaatctctggactgtgaagtgcaagatcggggaggaacgc
gccacggccatcgccctcatgcgcaagttcatcgcctaccagttcaccgacacgcctctg
cagatcaagtcggtggtggcccccgagcacgtcaagggctacatctacgtggaggcctac
aagcagacgcacgtcaagcaggccatcgagggcgtgggcaacctgcgcgtgggctactgg
aaccagcagatggtgcccatcaaggagatgaccgacgtgctcaaggtggtcaaggaggtc
accaacctcaagcccaaggcctgggtgcgcctcaagaggggcatctacaaggacgacatc
gcccaggtggattacgtggagcccagccagaaccagatctccctcaagatgatcccccgc
atcgactttgaccgcatcaaagcccggatgagcctgaaagactggttcgccaagaggaag
aagttcaagcgacccccccagcggcttttcgacgccgagaagatccggtccctgggaggg
gacgtggcgtccgacggcgattttctcattttcgagggcaaccgctacagccgcaagggt
ttcctgttcaagagcttcgccatgtcggcagtgatcacggagggtgtgaaaccgacgctg
tcggagctggaaaaattcgaggatcaacccgaaggcatcgacctggaggtggtgacggag
agcacggggaaggaacgggagcacaacttccaaccgggcgacaacgtggaggtttgcgag
ggcgagttgatcaatctccagggcaaaatcctcagcgtcgacggcaacaaaatcaccatc
atgcccaaacacgaggacctgaaggacatgctggagttcccggcacaggaattacggaaa
tacttcaaaatgggtgatcacgtcaaagtcatcgctgggcgctacgagggcgacacgggg
ctgatcgtgcgcgtggaggaaaactttgtcatcctcttctccgacctcaccatgcacgag
ctgaaggttttgccacgggacctgcagctttgctctgaaacggcctcgggcgttgatgtt
ggggggcagcacgaatggggggagctggtgcagctggacccccaaaccgtgggggtcatc
gtgcgcctggagcgagagaccttccaggttctgaacatgtacgggaaggtggtgacggtt
cggcaccaggcggtcaccaggaagaaggacaatcgcttcgccgtggcgctggactcggag
cagaacaacatccacgtcaaggacatcgtcaaagtcatcgacgggccccactcgggccgg
gagggcgagatccggcaccttttccgcggcttcgccttcctgcactgcaagaaactggtg
gaaaacggcggaatgttcgtctgcaaaacccggcacctcgtcctggccggcggctccaag
ccgcgggacgtcaccaatttcaccgtcggcggcttcgcccccatgagcccccggatcagc
agccccatgcaccccagtggggccggccaacgcgggggttttgggggcggcgggatgagc
cgcggccgcgggcgccgcgataacgacctgatcgggcagacggtgcggatctcccaggga
ccctacaaaggttacatcggggtggtgaaggacgcgacggagtcgacagcgcgcgtggag
ttgcactcgacgtgccaaaccatctcggtggatcggcagcgcctcaccaccgtggggtca
cggcgccccggcggggggatgacgtcgtcgtacggacgcacccccatgtacggctcccag
acccccatgtacggctccgggtcccggacccccatgtatgggtcgcagacccccctgcac
gacggaagccgcaccccccactacggctcgcagacccccctgcacgacggcagccgcacc
cccgcgcagagcggggcctgggaccccaacaaccccaacaccccgtcccgggcggatgag
gatttcgagtacggcttcgacgatgagcccaccccctcaccccaaggatatggggggacc
ccgaacccccaaaccccggggtaccccgacccctcatccccacaggtcacccagccctac
aacccccagacccccggcacccccgccatgtacaacacggagcagttctccccctacgcc
gtcccctccccccagggctcctaccagcccagcccctccccgcagagctaccaccaggtg
gcccccagccccgtgggctaccagaacagccactcgccggcctcctaccaccccacgccc
tcccccatggcctaccaggccagtcccagccccagcccggtgggttacagccccatgacc
cccggcgccccctctccgggggggtacaacccccacacccccggttcgggcatcgagcag
aactccagcgactgggtcaccaccgacatccaggtcaaggtcaaggacacgtacctggac
agccaggccgtgggacagaccggcgtcatccgcagcgtcaccggtgggatgtgctcggtg
tatttgaaggacagcgagaaggtcgtgagcatctccagcgagcacctggaacccgtcacc
cccaccaagagcaacaaggtcaaggtgatcctgggggaggaccgggaagccaccgggatc
ctgctcagcatcgacggcgaggatgggatcgtccgcatggacctggaggagcagctcaag
atcctcaacctgcgcttcctgggcaagctgctggaggcctga
DBGET
integrated database retrieval system
