KEGG   Caloenas nicobarica (Nicobar pigeon): 136001233
Entry
136001233         CDS       T11056                                 
Name
(RefSeq) collagen alpha-1(I) chain-like
  KO
K25740  soluble scavenger receptor cysteine-rich domain-containing protein SSC5D
Organism
cnic  Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:cnic00001]
 09190 Not Included in Pathway or Brite
  09193 Unclassified: signaling and cellular processes
   99995 Signaling proteins
    136001233
SSDB
Motif
Pfam: SRCR Apolipoprotein SRCR_2
Other DBs
NCBI-GeneID: 136001233
NCBI-ProteinID: XP_065511404
LinkDB
Position
39:complement(109624..124496)
AA seq 1798 aa
MGLGLGLLVLVGLLGPPSAAPFPVRLAGGPGRCAGRVELLHAGRWGTVCDDGWDERDAGV
TCRQLGCGAALAAPAGAWFGEGTGPVWLSELRCRGTERRLARCAHRGWRPHVCAHREDAG
VVCQAQQFQPLDGIESLWTPAVPTGVTTATGPAGSPPLRLAGGPGRCAGRLELLHGGLWG
TVCDDLWGLAAARVVCAQLGCGGPVAAPRAAFFGEGTGPVWLDDVRCRGDEESLLECPAA
PWGVSDCGHGQDAAVVCADELPPPDPRPTEPPPHRPRMEPPRLSPPNRTSPPPWMSPRDP
GAGHTKLLPPAPGTSMDVTVGHGDTGDTPGTGDPPGHGDTPGHGDTGDTPGTGDPPGHGD
TGDTPGTGDPPGHGDAPGHGDSGGTAGRGPVRIVRIKAQQDPAGGVQSTKVKGGREPAAT
RAKGGPDPGATRSKVGPDPGGTTRAKVGRDPGGTRSKVGQDAGDTRSKVGPDPGGTRSKV
GQDAGDTRSKMGPDAGDTRSKVGQDPGATRAKVGQEQGDTKRFKVGQGPGGTRLKMGQDP
GATTRSKMGRDPGGTRSKVGPDAGDTRSQMGPDAGDTRYQMGRDPGGTRSKVGQDAGDTR
SQMGRDPGGTRSKVGPDAGDTRSQMGQDAGDTRSQMGPDAGDTRSQMGQDPGGTRSKVGP
DAGDTRSQMGPDAGDTRSQMGQDPGGTRSKVGPDAGDTRSQMGQDAGDTRSKVGRDPGGT
RSKVGPEAGDTRSQMGPDAGDTRSQMGQDAGDTRSQMGPDAGDTRSQMGQDAGDTRSKMG
QDAGDTRSKVGRDPGDTRSKVGPDAGDTRSQMGRDPGGTRSKVGPDAGDTRSQMGPDAGD
SRSKTGRAPVVTPRVTRPIAGRDPTGPSRSTRPKAEQVLAGAAQSSRKPAGRGALGTTVA
KAKATRSPAGVTQQGPGRAAQVEVGQELVGTTRPKGREDLAPTTGVPAGDAMWGNQNLGE
PGPEGSMRSTRPAAEPGPEGSMRSTRPPAEPGPEGATWSTRPAIEPGPEGSMRSTRPPAE
PGPEGSTMSTRPVVEPGPEGSMRSTRPPAEPGPGGATWSTTLGDEPGPEGSTMSTHPPAE
PGPEGATWSTRPAIEPGPEGAMRSTRPAAEPGPEGATWSTTLGDEPGPEGSTMSTRPTAE
PGPEGSMRSTHLAVELDPDGTTWATRLGGEPGPEGAMRSTRLGYEPGPEGSMMSTRPTAG
LDAGGNTWTTRSSADLALEDTPRSTRPPAEPGPEGSMRSTRPPADLDGGGTTWSTRPAIE
PGPEGSMRSTRPAVEPGPEGSMRSTRPTAEPGPEGSMRSTRPPADLDAGGTTWSTRPVVE
PGPEGSTMSTRPTAGLDAGGTTWATRSSADLGLDDSMMSTRPAVELDAGGTTWTTRPVVE
PGLEGSTMSTRPTAVLDAGGTTWTTRPVVEPGLEGSTMSKRPTAEPGPEGSTMSTRPTAG
LDAGGTTWATRSSADVGLDDSTMSTRPAVELDPDGTTWSTHLGAEPGPEGSTMSTRSPSE
PGLDGATWSTRLGGEPGPEGSTMSTRPAVEPGPEGAMRSTRPVVEPGPEGSMRSTRPAVE
PGPEGSMRSTRPTADLDADGTTWSTSPVVEAGPENITWSTRPTAEPGPEGSTMSTRPVVE
PGPEGSMRSTRPTAEPRSEGSMRSTRPPAEPGPEGTMRSTRPPAGLDAGGTTWSTRPVVE
PGPEGSTMSARPTADLDPDGVSPAVSASASGSGFRGPCPLLRELRGLRGDVRALTAALRH
FRGGVWGRVTPPPGPGAGGRRGGGRCCDPPGNKWGRSPRCSARGCWFGGGGPRFGGGG
NT seq 5397 nt   +upstreamnt  +downstreamnt
atggggctgggactggggctgctggtgctggtggggctgctgggacctcccagtgcagcc
ccgttcccggtgcggctggccgggggtcccgggcgctgcgcggggcgcgtggagctgctg
cacgcgggcaggtgggggacggtgtgcgacgacggctgggacgagcgcgacgcgggggtg
acgtgccggcagctgggctgcggggccgcgctggccgcccccgcgggcgcctggttcggc
gagggcaccgggcccgtgtggctgagcgagctgcgctgccgcggcaccgagcgccgcctc
gcccgctgcgcccaccgcggctggcggccgcacgtctgcgcccaccgcgaggacgccggc
gtcgtgtgccaggctcagcagttccagcccctggatggcatcgagagcctctggacgccc
gcggtgccaaccggggtcaccacggccaccgggccggcggggtcccccccgttgcgtctg
gccgggggtcccggtcgctgcgccggccgcctggagctgctgcacggggggctctggggc
accgtgtgcgacgacctgtggggtctggcggccgcccgggtggtctgcgcccagctgggc
tgcgggggccccgtcgccgccccccgcgccgctttcttcggggaggggacgggccccgtg
tggctggacgacgtgcggtgccgcggggacgaggagtcgctgctggagtgtccggcggcg
ccctggggggtcagcgactgcgggcacgggcaggatgcggccgtggtctgcgcggacgag
ctgccccccccggacccccgccccacagagccccccccccaccggccgcggatggagccg
ccgcggctgtcaccccccaaccggacgtcacctcccccctggatgtcaccgcgggacccc
ggagcaggacacacgaagctgctgccgccagcaccggggacatcgatggatgtgaccgtg
ggacacggggacaccggggacacccccggcactggggaccccccgggacacggggacacc
ccaggacacggggacaccggggacacccccggcactggggaccccccgggacacggcgac
accggggacacccccggcactggggaccccccgggacacggggacgccccaggacacggg
gacagcgggggcaccgcgggacggggtcccgtgcggatcgtcaggatcaaagcgcagcag
gacccggccgggggcgtccagagcaccaaggtcaagggcggacgggaacccgcagccacc
agggccaaggggggaccagatccgggggccaccagatctaaagtgggaccagatccaggt
ggtaccaccagggccaaggtgggacgagatcctggtggcaccagatctaaagtgggacaa
gatgcaggtgacaccaggtccaaggtgggaccagatcctggtggcaccagatctaaagtg
ggacaagatgcaggtgacaccaggtccaagatgggaccagatgcaggtgacaccaggtcc
aaggtgggacaagatccaggggccaccagagccaaggtgggacaggaacaaggtgacacc
aagaggttcaaggtgggacaaggtccaggtggcaccagactcaagatgggacaagatcca
ggggccaccaccaggtccaagatgggacgagatcctggtggcaccagatctaaagtggga
ccagatgcaggtgacaccaggtcccagatgggaccagatgcaggtgacaccaggtaccag
atgggacgagatcctggtggcaccagatctaaagtgggacaagatgcaggtgacaccagg
tcccagatgggacgagatcctggtggcaccagatctaaagtgggaccagatgcaggtgac
accaggtcccagatgggacaagatgcaggtgacaccaggtcccagatgggaccagatgca
ggtgacaccaggtcccagatgggacaagatcctggtggcaccagatctaaagtgggacca
gatgcaggtgacaccaggtcccagatgggaccagatgcaggtgacaccaggtcccagatg
ggacaagatcctggtggcaccagatctaaagtgggaccagatgcaggtgacaccaggtcc
cagatgggacaagatgcaggtgacaccaggtccaaggtgggacgagatcctggtggcacc
agatctaaagtgggaccagaggcaggtgacaccaggtcccagatgggaccagatgcaggt
gacaccaggtcccagatgggacaagatgcaggtgacaccaggtcccagatgggaccagat
gcaggtgacaccaggtcccagatgggacaagatgcaggtgacaccaggtccaagatggga
caagatgcaggtgacaccaggtccaaggtgggacgagatcctggtgacaccagatctaaa
gtgggaccagatgcaggtgacaccaggtcccagatgggacgagatcctggtggcaccaga
tctaaagtgggaccagatgcaggtgacaccaggtcccagatgggaccagatgcaggtgac
agcaggtccaagacgggacgggctcccgttgtcaccccccgtgtcacccgtcccatcgca
ggacgggatcccaccggcccatcacggagcacccggcccaaagccgagcaggtcctggca
ggtgccgcccagagctccaggaaaccagcgggacggggggcgcttgggaccacggtggcc
aaggccaaggccacgaggagtccagccggtgtcacccaacagggtcccggtcgtgccgct
caggtcgaggtgggacaggagctggttgggaccaccaggcccaaaggcagggaggacttg
gcccccaccacgggggtcccagcaggtgatgccatgtggggtaaccagaacctgggagaa
cctggtccagaaggttccatgaggagcacacgtcctgcagcagaaccaggtccagaaggt
tccatgaggagcacacgtcccccagcagaaccaggtccagaaggtgccacatggagcaca
cgtcctgcaatagaaccaggtccagaaggttccatgaggagcacacgtcccccagcagaa
ccaggtccagaaggttccacgatgagcacacgtcctgtagtagaaccaggtccagaaggt
tccatgaggagcacacgtcccccagcagaaccaggtccaggaggtgccacatggagcaca
actcttggagatgaaccaggtccagaaggttccacaatgagcacacatcccccagcagaa
ccaggtccagaaggtgccacatggagcacacgtcctgcaatagaaccaggtccagaaggt
gccatgaggagcacacgtcctgcagcagaaccaggtccagaaggtgccacatggagcaca
actcttggagatgaaccaggtccagaaggttccacgatgagcacacgtcccacagcagaa
ccaggtccagaaggttccatgaggagcacacatcttgcagtggagctagatccagatggt
accacatgggccacacgtcttggaggagaaccaggtccagaaggtgccatgaggagcaca
cgtcttggatatgaacctggtccagaagggtccatgatgagcacacgtcccacagcaggt
ctggatgcaggtggaaacacatggacgacacgttcttcagcagatcttgctctagaagac
accccgaggagcacacgtcccccagcagaaccaggtccagaaggttccatgaggagcaca
cgtcccccagcagatctggatggaggtggaaccacatggagcacacgtcctgcaatagaa
ccaggtccagaaggttccatgaggagcacacgtcctgcagtagaaccaggtccagaaggt
tccatgaggagcacacgtcccacagcagaaccaggtccagaaggttccatgaggagcaca
cgtcccccagcagatctggatgcaggtggaaccacatggagcacacgtcctgtagtagaa
ccaggtccagaaggttccacgatgagcacacgtcccacagcaggtctggatgcaggtgga
accacatgggcaacacgttcttcagcagatcttggtctagatgattccatgatgagcaca
cgtcctgcagtggaactggatgcaggtggcaccacatggacaacacgtcctgtagtagaa
ccaggtctagaaggttccacgatgagcacacgtcccacagcagttctggatgcaggtgga
accacatggacaacacgtcctgtagtagaaccaggtctagaaggttccacgatgagcaaa
cgtcccacagcagaacctggtccagaaggttccacaatgagcacacgtcccacagcaggt
ctggatgcaggtggaaccacatgggcaacacgttcttcagcagatgttggtctagatgat
tccacgatgagcacacgtcctgcagtggagctggatccagatggtaccacatggagcacc
catcttggagcagaaccaggcccagaaggttccacgatgagcacacgttctccatcagaa
ccaggtctagatggtgccacatggagcacacgtcttggaggtgaacctggtccagaaggt
tccacgatgagcacacgtcctgcagtagaaccaggtccagaaggtgccatgaggagcaca
cgtcctgtagtagaaccaggtccagaaggttccatgaggagcacacgtcctgcagtagaa
ccaggtccagaaggttccatgaggagcacacgtcccacagcagatctggatgcagatggg
accacatggagcacaagtcctgtagtagaagcaggtccagaaaatatcacatggagcaca
cgccccacagcagaaccaggtccagaaggttccacgatgagcacacgtcctgtagtagaa
ccaggtccagaaggttccatgaggagcacacgtcccacagcagaaccacgttcagaaggt
tccatgaggagcacacgtcccccagcagaaccaggtccagaaggtaccatgaggagcaca
cgtcccccagcaggtctggatgcaggtggaaccacatggagcacacgtcctgtagtagaa
ccaggtccagagggttccacgatgagcgcacgtcctacagcagatctggatccagatggt
gtgtcccccgccgtttccgcttccgcttccggttccggtttccggggcccgtgcccgctg
ctgcgggagctgcgcgggctgcgcggggacgtgcgcgcgctcaccgcggcgctgcgtcac
ttccggggcggggtctggggccgcgtgaccccgccccccgggcccggcgcgggggggagg
agagggggggggcgctgctgtgacccccccggcaataaatggggccggagcccccgctgc
agcgcccgcgggtgctggtttggggggggggggcctcgttttgggggggggggctga

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