Caloenas nicobarica (Nicobar pigeon): 136001289
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Entry
136001289 CDS
T11056
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic03018
RNA degradation
Brite
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136001289 (MTREX)
Messenger RNA biogenesis [BR:
cnic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
136001289 (MTREX)
Spliceosome [BR:
cnic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
136001289 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
136001289 (MTREX)
Ribosome biogenesis [BR:
cnic03009
]
Eukaryotic type
Pre-60S particles
Helicases
136001289 (MTREX)
Transfer RNA biogenesis [BR:
cnic03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
136001289 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
136001289
NCBI-ProteinID:
XP_065511472
LinkDB
All DBs
Position
Z:26043687..26090355
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEDSAAAASGAKKSKAAATEGARRPGKRSEEKSTVAVTGKTKREAEV
ESTEDAVLGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCERKAQIAMDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgagctgttcagcgtgtttgaggaggactcggccgccgcc
gcctccggcgccaagaagagtaaagcggccgccaccgagggcgccaggagacccggaaaa
cgatcggaggagaaatctacagtagctgtgacagggaagaccaaaagggaagctgaagtc
gaaagtactgaagatgccgttttgggaaagaagccaaaattggaagatgttgtatcagaa
gatgctaatctggcagacttgatgcctcaagtaaaggtgcaagctgtggaaactgttgaa
ggttgtacgcatgaggttgcacttccagcagatgaagacttcacaggtctgaagccaaga
actggaaaagctgcaaaagaatatccgtttattcttgatgcctttcagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcagctcatacatcagctggtaaaacc
gtttgtgcagagtatgcaattgccctggctttgagggagaagcagcgtgtgatatttaca
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatgaca
actgagattttgagaagtatgctttacagaggttctgaggttatgcgagaagttgcatgg
gttatttttgatgaaatccactacatgagagattcagaacgcggtgtggtttgggaagag
acaattattttactccccgacaacgttcattatgtgttcctttctgcaactattccaaat
gcacgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttac
actgactatcgtcctacaccactgcagcattatatattcccagcgggaggagatggactg
catctagttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagacttggcaaaaggggatcagaaaggcaggaaaggaggaacg
aaaggtccatcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaatt
gattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttctg
aagcgaggaattggtatccatcatggcggtctgcttcctatcttaaaagaaaccatagaa
attcttttctctgagggcctaataaaggccttatttgcaacagagacttttgctatggga
attaatatgccagccaggactgtgctatttacgagtgccagtaaatttgatggaaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggtcgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcctttaaacagtgcgttccacctgacgtacaac
atggtattaaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaagtcc
ttctatcagttccagcattacagaactattccagaaatagtagaaagagtgaataattta
gaaggccagtacaacaaaatagcaattcccaatgaagaaaatgtggtcatctactacaaa
atccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcataaaccaaag
tattgcttgccttttctacagccaggaagactggtaaaggtgaagaacgaaggtgatgac
tttggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattctggt
gaattggacccattgtatgtagttgaagtgctactgcattgcagcaaagagagtttgaaa
aattccgctactgaggctgcaaagccagccagacctgacgagaaaggagagatgcaggtt
gttcctgttttggtacatcttctctcagctatcagcagtgtccgactttacataccaaag
gacctgaggcctattgacaacaggcagagtgtgttaaaatccatacaagaagtacagaag
cgatttcccgatggagtaccattactagaccctattgatgacatgggcatcaaagatcaa
ggactgaaaaaagtaatccaaaaagtagaggcatttgaacataggatgtattcacatcct
cttcacaatgatcccaacttggaaaccgtatacaaactttgtgaaagaaaagcacagatt
gctatggatattaaagcagcaaagcgagaactgaaaaaagccagaactgtcttacaaatg
gatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgctacgtcttcagat
gttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactgctcctg
acagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgcacta
ctaagctgttttgtatttcaagagaattccagtgaaatgccaaaattgacagagcagttg
gcaggaccacttcggcaaatgcaggagtgtgcgaaaagaatcgccaaggtgtcagcagaa
gcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctaatggat
gttgtgtatacgtgggcaaatggagctaactttgctcacatctgcaaaatgactgatgtg
tttgaaggtagcataattcgttgcatgagaaggctagaagagttgcttcggcagatgtgc
caggctgcaaaagccattggaaacacagagctggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtatttgctgcaagcctttacctgtaa
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