Caloenas nicobarica (Nicobar pigeon): 136001431
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Entry
136001431 CDS
T11056
Symbol
VPS13A
Name
(RefSeq) intermembrane lipid transfer protein VPS13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cnic04131
]
136001431 (VPS13A)
Membrane trafficking [BR:
cnic04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
136001431 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
136001431
NCBI-ProteinID:
XP_065511821
LinkDB
All DBs
Position
Z:complement(57208520..57315006)
Genome browser
AA seq
3194 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEARQLLEARQRELQRIEE
AKQKIADQDKVKEEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDITNRNNPLSFGISLQ
NLSLQTSDKNWNPCLHDETAKLFYKLVRLDNLFAYWNVKSEMFYHGGCEESLVNLKQGVA
SHNVIPEGYDFVFRPISARAKLLMNPRSDVDFSSPKMDLDVNLQDITVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPVHNNAKTWWKYIIYGILEVNVQPKLQMWSWEHIWHHRK
QVKNYKDMYKTKITSKKPNEEILKLLEEFEKDLDIFNITLARQQAEVEATKAGLKIYRPG
VKQDDENSGGWFSWIWSWSSEKKDEQKQEVKGSSLEELMTPEEKAKLYAAIGYSETAVDP
TLPKSYEAMKFSVKLLSMSISIRENKQTPKLVEFALTGLSTVFTQRPGAQAIRFETEITS
LEVTGMSREKCTPCLLSSRTVYSDKSTSLLSIMFETNPLDEKADQRLRIESQPLEIVYDA
MTINSLVAFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLKINLMASY
IIVPQKGFYDHTSNLLLLDLGSLKMKSKSRSDLSELKVGQSTIEDIMSRAYDSFDIQLSS
IQLLYSKNDENWQEARKLKYSSQHILQPLDVKVEFSRAMVVTDARMPKFKLSGQLPLLSI
QISDQKLTSILELIDSIPKPESAPATSSPKITEAAISPVLSAPHLSQGVFPVLDLHSFAE
SESEEEFYDALSSPVEDMPFFEAPSGSLKRASSIRRKKLCKQESLKNMTEFQLRFEVAEV
LIKLCRLTGNTETPVLQLDIVGLGTELKLRTFDMTANAFLREVCLLCPEYMDDNDKPVYI
ITTLDNVEDDLLTLEYVKADINGPELKTAYQNIIQKIKVNFSSLDVHLHTEALLNAMNYL
NNLLPKQETKVTEEQVHEKIEEKKDVLKKLTSKKSKYEDVIDLNICADLSGLRIFIREKK
HRIAEIHIEGLDSQVIMKKAATEVTAKLKNIIIVDSDEMALYKKALYITGKEVFNFRMIS
YVNATDGIAYTNMDVVDNRIYLTVGCIQVVFVNKFVSSILAFINNFQAAKEALTEATVQA
AEKAATGVKELAERSSRLALDINIKAPVVIVPQSAMSANVLVADLGLITVKNQFFIAKTK
TRYNLPPVVDSMTVKLSELKLYRSCYEQGSLQTEVQLLQPVNLEVAVERNLAAAWYNEVP
DIEISGRLKPMNLILSQEDITTILRTLNENIGESSGSSTSLPEPKDTTSHCSDMHSTSQH
SAGVTVVTSAVVELHSPVKIKTTLKLDFRFDSLTLVLYSPNSKEVTNLDQRDDLLKLAEF
KLVLMSAAVKMLSDGSMNASVKLANCTLDDKRQSIQKATPRMVDMKHGFEKKVMMDISYK
QGRDGTILDVIVQEIYLCASMEFLLTVADIFLKANAESAAAQRSLKQSLPLKDQAPVQPV
STMEMNIVVKNPEVVFVADLTRSDAPALVVTTQCEVFIKSSPERYSMTAAVKEIQMKACP
FLPEKRKGNVTTVLQPCDLFFEMKQSGTNPQTADLTIKSLTIKVSPIIINTVITITSALY
QTAETTEEETSQIPPDLWNKKDIKNLKMWFLEESNENGDTNPAAELVPTGESLKMNIESV
FLTLEAGVGHRTVPMLLAKSSFLGEVKNWSSLINLRSRLELEVHYFNEMFGVWEPLLEPL
EVEKTDLFKPWILEIKMKKKAKKTLVESDAEEENYKVPEYKTVINVSSKDQLNITLSKCG
LQMLSNLGTAFAEAASQTSDIFKKDRAPFVIINSLGLPITVSPSDSFSVLNVEFGAKILH
LRDGESLNMEFVRTKNESDQFTAMTTLSSKKFYIQICPHNHSTVEKIPLTKVRRCIYRVR
HEESGVERSIVCQIDTVEGSKMITIRSPIQIRNHFSIPLNIFEEGRCLGTASPENEFNIP
LSSYRSILSLQPLTNENGVDGEYDMCEGITFDEIVKNVDSLLQRKCQSVRSTNHSLIINI
VAVKDTLTSSLCAEDQWDFPYVVHLWPSVLLRNLLPYHITYSVEGDGNKYDTLEEGCSVQ
IHNAVLDQTKLDLQLLNYLDQNWKSEYHIKSNLPDITFTTFYCITELDKTELDIAVHVTY
TTGQMVIAVHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFFQNNKVQLM
VTDSELSDQFSLDTVGSHGSVKCKSQKKEYQVGVTIHNSSFNITRIVTFTPFFMISNRSK
YTLEVAEEGQEKWIPIVLQQCIPFWPESDANKLLVRVENSNLPPKKINFDKQENCLLLHL
DNKLGGITVDVNLTEHSTVITFSNYHDGAAPFLLINHTKEEIIEYGQSSLSELEDCLQPN
KAVLYTWADPAGSRKLKWKCGSRTEEITPKEDKMEILSLDCRKVVYLVSFFEGLQRIVLI
TEDENVFKLTYESVKAELAEQEIVLSLQDVGISLVNNYTKQEVSYIGITSSDVVWETKPK
KKSRWRPMSVKQTDKLEQEFKEYSELSPSENKIVELESNVLVCLTPNGMNMKIQQPNEIP
IRRNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYPIKPPKSITLDSAPK
PFTDVSIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLYALVEFFTQTDVPSDQELELF
KKDVESLQEELMNVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGEDSNKEERKSELIPL
QSLNLLLKSIGATLTDVQDVVFKLAFFELSYHFCTTQQLQSAVVRHYSKQAIKQMYVLIL
GLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLKALVGGAVGGLAGAA
SRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGLVSGFVSGITGIVTK
PIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKVADSSEDVISLRPPR
FFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDLLMVTKSGVLFVTKG
TFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFGKIINFRSPEDAKWI
LSKLEEVRENQPKV
NT seq
9585 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcgctggtcgtggacgtcctgaaccggttcctcggcgactacgtggtg
aacctggacagctcgcagctgaagctgggcatctggggaggagccgtagcactgaagaat
cttgaaataaaggaaaatgcactgagtcagctggatgtgccatttaaagttaaagcagga
catattggtcaacttaacctacagattccatggcaaaacctttatactcaacccgttgag
gcagttcttgatggagtttatttgcttattgtgcccacagccagcataaaatatgatgct
gaaaaagaagcaaggcagctcttggaagcaaggcagagggagttgcagaggatagaggaa
gcaaagcagaaaatagctgaccaagataaagtaaaagaagagaaacaagacacttttgta
gaaaaactagtcactcaggtcatcaaaaatcttcaagtgaaaatttccaacatccatatt
cgctatgaagatgatatcacaaatcggaataaccccttgtcatttgggatttcacttcag
aatctaagtttgcagacctcagataagaattggaatccatgtttacatgatgaaactgcc
aagttattttacaagcttgtacgactggataacctttttgcatactggaatgtgaaatca
gagatgttctaccatggtggttgtgaggaatcattggttaacttaaaacagggagttgcc
agccacaatgtgattccagaaggttatgattttgttttccgcccaatttcagcgagagcc
aaactcctcatgaatcctcgatctgatgttgacttttcatcaccgaaaatggatttagat
gtaaatttacaggatataactgttgaattcaataagccacagtacttcagtgttatggag
cttcttgagtctattgatatgatgactcgaaatctgccatatcggaagtacagacctgat
gttccagtgcacaacaatgccaagacatggtggaaatatattatttatggcatccttgaa
gtaaatgttcaacctaagctccaaatgtggtcatgggaacatatttggcaccataggaaa
caagtgaagaactataaagatatgtataaaacaaagataacgtcaaaaaaacctaatgaa
gaaatcttaaaattgttggaggaatttgaaaaggacttggatatttttaacatcactcta
gcaagacaacaagcagaagttgaggcaactaaggctggattaaaaatctacagaccagga
gtaaaacaagatgatgagaattctggtggctggtttagctggatatggagctggtcaagt
gaaaaaaaggatgaacaaaaacaagaagtaaagggttcaagtcttgaagagctgatgaca
cctgaagagaaggctaaactttatgcagcaattggatatagtgaaacagctgtggatcca
acacttccaaaatcatatgaagccatgaaattctctgtgaagttattaagcatgtctata
tcaataagagaaaacaagcaaactcctaagcttgtagaatttgcattaactggcttgagt
acggtatttacccaacgaccaggtgcacaagcaataagatttgaaacagaaattacctca
cttgaagttacgggcatgtctcgagaaaagtgcaccccctgtctcctatcttctcgaaca
gtctactcggacaagagtacttcactgttaagtataatgtttgagactaatcctttggat
gagaaagcagatcagaggcttagaatagaatcacaaccactggaaatagtgtatgatgcg
atgacaataaatagcttagtggctttcttcaggcctccgaaagatgtacatttagagcag
ctgacatcagccactctgatgaagctcgaagagttccgtgaaaaaacatccacaggtttg
ctctatgttattgaaacccaaaaagttcttgacctcaaaattaacctcatggcttcatac
atcattgttccacaaaaagggttctatgaccatacatccaatttactacttctggacctt
ggtagtcttaagatgaaaagcaaaagtcgttctgatttgtcagaactcaaagtaggacaa
agcacgattgaagatataatgtcaagagcttacgacagttttgatatccagcttagcagt
atacagttactgtacagcaaaaatgatgagaactggcaagaggctcggaagctgaaatat
tcgtctcaacatatcttgcagcctttggacgtgaaagtggaatttagcagggctatggtt
gttacagatgcaagaatgcccaagttcaaattgtctggacagctgcctttactttctatc
caaatatcagaccagaagctgacaagtatcttggagctaattgatagcattcctaaacca
gaaagtgctcctgctaccagttctccaaaaataactgaggctgcaatatcccctgtactg
tcagcaccacatttatcacaaggtgtatttcctgttttggatcttcattcatttgctgag
tcagaatcagaagaggaattttacgatgctctaagcagtcctgtggaagacatgccattt
tttgaagccccatctggttccctcaagcgagctagcagtataaggcgaaaaaaactgtgc
aaacaagaatctctgaaaaatatgacagaattccagctaagatttgaagtagctgaggtg
ttaattaagttatgccgtcttactggtaatactgagacacctgtgctgcagcttgatatt
gtagggttgggcactgaacttaagttaagaacatttgacatgactgcaaatgctttcctt
cgtgaagtttgtctgctgtgcccagagtatatggatgataatgacaagccagtttacatc
attactactttggataatgtagaagatgatcttctcactctagagtacgtaaaggctgat
attaatggaccggaactgaagactgcctatcagaatattatacagaaaataaaggtgaac
ttttcatctctagatgttcatttgcatactgaagctctgctgaatgctatgaactatctg
aataatcttctacccaaacaagaaactaaagttacagaggaacaggtccatgaaaaaata
gaggagaagaaggatgttcttaagaaattaacatcaaaaaaatcaaagtatgaagatgtt
atcgatctcaatatctgtgcggatttgtccggtttacgtatctttattagagagaaaaaa
cacagaatagctgaaattcacattgaaggtctggatagccaagtgattatgaagaaagca
gcaacagaagtgactgcaaaattaaagaacatcattattgtggattctgatgagatggcc
ttgtataaaaaggctctttacatcacaggaaaagaagtcttcaacttcagaatgatatca
tatgtgaatgctacagatggcattgcatatacaaatatggatgttgttgacaatcgtatt
tacctaactgttgggtgtattcaagtagtttttgtcaacaagtttgtttcatctattctg
gccttcataaataactttcaagctgccaaggaagctcttactgaggcaactgttcaagca
gcagagaaagcagctacaggtgtaaaagagctggcggagcgtagttcccgtttggctcta
gatatcaatattaaagcacctgtcgtgatagttccacagtcagcaatgtctgcaaatgtc
ctggtggctgatcttggtctaatcaccgtgaagaaccaattctttatcgctaaaacaaaa
acacggtataatctcccacctgttgttgactctatgacagtgaaattgagtgaactgaag
ttatacagatcgtgctatgagcagggttcattgcaaactgaagtacagttgctgcagcca
gtcaatctggaagtagctgttgaacggaatttagctgctgcatggtataatgaagttcct
gatattgaaatatctggccgactcaagcccatgaatctaattctcagtcaggaagacatt
accacaatattgaggacactaaatgaaaatataggtgaaagctctggctcatcaacatct
ttgccagaaccaaaagatacgactagccattgtagtgatatgcacagcacttcacagcac
tctgcaggtgtaactgttgtgacatcagctgtggtggaattgcattcacctgtgaaaata
aaaacaaccctaaaactggacttcagattcgactctctgactttagtgttgtatagtccg
aattcaaaagaggttacaaatttggatcagagagatgaccttttgaagcttgcagaattt
aagttagttttgatgtcagctgctgtcaaaatgttatcagatggttcaatgaatgcttca
gtcaagctagcaaactgtacattagatgataaaagacagtcaatccagaaggctacacca
aggatggtggacatgaaacatggatttgaaaagaaagttatgatggatataagctataag
caggggagagatggcactattcttgatgtgattgttcaggagatatacctttgtgcaagc
atggagtttctacttactgttgcagatatattcctaaaggctaatgcagaaagtgctgct
gcacagagaagtctcaaacagtctttacctttgaaggaccaagcgcctgtgcagcctgta
tctacaatggaaatgaacattgttgttaaaaatccagaggttgtgtttgtggccgattta
acaagaagtgatgctcctgcattggtggttacaacacagtgtgaggtcttcattaaaagt
agccctgaaagatatagcatgacagctgctgttaaagagatacaaatgaaagcatgtcca
tttcttccagaaaaaaggaaagggaacgttactacggtattacagccttgtgacttgttc
tttgaaatgaaacagtcagggactaatccacagacagctgacctaacgattaaatctcta
acaataaaagtttcgccaataatcataaacacagtaattactattacatcagccctttat
caaactgcagaaacaacagaagaagagactagtcaaattcctccagacttgtggaataag
aaagatataaaaaatctaaagatgtggtttcttgaagagtcaaacgaaaatggagataca
aatccagccgctgaactggttcccacaggagagtcattgaagatgaatatagaatctgtg
tttctaacgcttgaagctggggttgggcatcgaaccgtacccatgcttttagccaagtcc
tcatttcttggagaagtcaaaaactggagtagcctaatcaacctacgttctcgtcttgag
ctggaggtacactattttaatgagatgtttggggtgtgggaacctttgctcgaaccacta
gaagttgagaagactgatttattcaaaccatggattcttgaaatcaagatgaagaagaag
gctaaaaaaacattggttgaatcagatgctgaagaagaaaactacaaagttccagaatat
aaaacagtaataaatgtttcctcaaaagaccagctcaacattacactatccaaatgtggg
ctacaaatgttgagtaacttgggcacggcatttgctgaagcagctagtcaaacttcagac
atcttcaaaaaagaccgagcaccatttgtgataataaattctttaggacttcccatcact
gtctcacctagtgattcctttagtgtcctaaatgttgaatttggagcaaaaatacttcat
ttaagagatggagagagtttaaatatggaatttgtcagaactaaaaatgagagtgaccag
ttcacagcaatgacaactctgagtagcaagaagttttacattcagatctgtccacataat
cattccactgtggaaaagattccattgacaaaagtgaggcgatgtatttacagagtgaga
cacgaggaatcaggtgttgaaaggtccattgtctgccaaattgataccgttgaaggaagc
aagatgataactatacgttctcctattcaaataaggaatcatttttcaatccctttaaat
atttttgaggaaggaagatgtttagggactgcttcaccagagaatgaattcaacatacca
ttgtcctcttacagatccatactgagtttgcaaccactaaccaatgaaaatggagtggac
ggagagtatgatatgtgtgaaggaattacatttgatgaaattgtgaaaaatgttgacagt
ttattacagcggaaatgccagtctgtgaggtcaactaaccactcgcttatcatcaatatt
gttgctgtaaaagacacgttgacatcttcattatgtgcagaagatcaatgggattttccc
tatgttgttcatttatggccttctgttcttctccgcaatcttcttccttatcacataact
tattctgtggagggagatgggaacaaatatgacactttagaagaaggatgttctgtgcag
attcataatgcagtcttggatcaaacaaaactagatctgcagttgcttaactatcttgat
caaaattggaaaagcgagtaccatataaaaagcaatctaccggatataaccttcacgaca
ttttactgcatcacggagttggataagaccgagctggatattgcggtccatgtgacttac
acaactgggcagatggttatagcagttcacagtccatactggatggtaaataaaaccggt
cgaatgttgcaatacaaagctgatggtattcaccgcaagcatcctccggattacaaaaag
ccgctccttttttctttccagcccaaaaacttcttccaaaacaacaaggtgcagcttatg
gtaactgacagtgaactgtctgatcagttttcactggacactgttggaagtcatggttct
gtgaaatgcaagagtcaaaaaaaggaatatcaagtcggtgtcaccatacacaacagcagt
tttaatattactaggattgtaactttcactccattttttatgatctcaaatagaagcaaa
tacactttggaagtagctgaagaaggccaggaaaaatggattcctattgttttgcaacag
tgcattcccttttggcctgaaagtgatgccaacaaacttcttgttagagttgaaaattct
aatctcccaccaaagaaaataaattttgataagcaggaaaactgtctgctactgcatttg
gacaacaagcttggaggaattacagtggatgtaaacctgactgaacattctacagtgatt
accttttccaattaccatgatggtgcagctccatttctgttgataaaccatactaaagag
gaaattattgagtatggacaaagctccctcagtgaactggaagactgtcttcagccaaat
aaggcagtactgtatacttgggcagacccagcaggatctagaaagttgaaatggaaatgt
ggaagtagaactgaggaaattacaccaaaagaggacaaaatggaaatactcagcctggat
tgtagaaaagtggtctatttagtgtcattttttgaaggtttgcagcgtattgtcctaatc
actgaagatgagaatgtgtttaaattgacatatgaaagtgtaaaagcagaactagcagaa
caagaaattgttctatctttgcaagatgttggaatttcgttggttaataattacacaaag
caggaggtgtcctacattggaattacgagttctgatgtggtttgggagacgaaacccaag
aagaaatcaagatggagaccaatgagtgttaagcagactgataaattagagcaagaattc
aaagagtacagtgagctaagtccttcagaaaataagattgttgagttggaatcaaatgtt
ttggtatgtctaactcctaatggaatgaatatgaaaattcaacaaccaaatgagattcct
atcagaaggaattatctgccagctctaaaagtggaatacagttcatctgcacatcagaag
tctttcagaattcaaatttacaggatacagatacaaaaccagattcctggagccatattt
ccctttgtgttctatcccattaaacctccaaagtccatcaccttggattcagcaccaaaa
ccatttactgatgtcagcattgtcatgagaactgcaggacactcacaaatatctcatatt
aagtattttaaggtcctgattcaagagatggatctcagattagatcttggatttctgtat
gcactggttgaattctttacacagactgatgtgccaagtgaccaagagctagaacttttc
aaaaaggatgttgaatctcttcaagaggaactgatgaatgtgtcatcaatggatacgtca
caaatcagcttgtatgaatactttcatatatctccaattaagttacacttaagcttttct
ctcagcacgggtggagaagatagtaacaaagaagaaagaaagagtgaattgataccactt
cagtccttgaatctcctgctgaagagcataggggccaccctcacagatgtacaagatgtt
gtctttaagttggcattctttgaactcagctatcacttctgtactacgcaacagctccaa
tcagcagttgtaaggcattattcaaaacaggctattaaacagatgtatgttcttattctt
ggccttgatgtcttgggtaatccatttggattcataagaggcttgtctgaaggtgtagag
gcgttcttctatgaaccttaccagggagccatccagggtcctgaagaatttatagaagga
atggcactaggacttaaagcactagtagggggagctgttggtggattagctggtgctgca
tcgagaatcactggtgctatggcaaaaggagtagctgcaataactatggatgaggattac
cagcagaaaaggagagaagccatgaataaacagcccaccggtctgagagagggtatcact
cgtggtggaaaaggattagtttctggttttgtcagtggaataacaggaatagttacaaaa
ccaataagaggagctcagaaagaaggagcagctggttttttcaaaggtgttggaaaaggc
ttagtgggagcagtagctagacctactggaggaatcatagacatggcaagcagcacgttt
cagggtattaaaaaagttgcggattcatcggaagatgtgataagtctgcgcccacctcgc
ttctttggtgaagatggagttattagaccttacagattaagggatggaactggaagtcaa
atgttacagaaaattgaaaatggaagatttgcaaaacttcgatacattgcacatgccatg
gtaaacagtacagatctgttaatggtaacgaaaagtggtgtgctatttgtaacaaaaggg
acattcggacagctgacatgtgaatggcaatacacttatgatgaatttaccaaagaacca
ttcattgttgatggcagaagattacgcattgaagccaaggaacgagttaagtctgtgttc
catgcgaaagaatttggaaaaattattaattttagaagtccagaggatgctaagtggatc
ctttctaaactggaagaagtgagggagaatcagccaaaagtataa
DBGET
integrated database retrieval system
