Caloenas nicobarica (Nicobar pigeon): 136002080
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Entry
136002080 CDS
T11056
Symbol
HFM1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cnic03036
]
136002080 (HFM1)
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
136002080 (HFM1)
Chromosome and associated proteins [BR:
cnic03036
]
Eukaryotic type
Meiosis-specific proteins
Others
136002080 (HFM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
ResIII
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
136002080
NCBI-ProteinID:
XP_065512985
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All DBs
Position
Z:92492910..92528233
Genome browser
AA seq
1442 aa
AA seq
DB search
MFNSADMVFSLDNLFYERPDTRQRYPENKEPKICWLAPAPAIAEIPAAEELQRELEKNAA
STHMGGRKHHKFIQPCKSNTEEVNDNSPGPVHFGIASEKEVLQLSAGERENISFPHESLK
MVSLFLTSDQEKSKTELRASHQPGANFSQNKLLSNFPENSDDESAHSTFRKSLFKASCYT
YKNTEFKDSSVEVKEIDIYLNTSENMKEVRKEGLWRNNHHSPITKDSDFTLHRVNDGDIA
FKNGIKMESFSNASEILDITGTTVRKLENLRAVTEIPTQFRSIFKEFPYFNYAQSKALDD
LLYTDRNFVICAPTGSGKTVMFELAITRLLMEASLPWINIKVVYMAPIKALCSQRFDDWK
EKFGPIGLSCKELTGDTVMDDLFEIHHADIIITTPEKWDSMTRRWRDNSIVQLVRLFLID
EVHVIKDEGRGATLEVVVSRMKTVQSSLWRLLENHDTVPPLRFVAVSATIPNAEDIAEWL
SDSKMPAVCLKIDEDQRPVKLRKIVLGFPCSDNQTEFKFDLTLNYKIATIIQTYSEQKPA
LVFCATRKGVQQAASVLAKDAKFLLSIEQKQRLQRSANSLKDAKLRDLLMYGVAYHHAGM
EVSDRKIIEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYVGGVFQEYSETDILQ
MIGRAGRPQFDTTATAVIMTRWSTREKYIQMLNGADIIESSLHRHLVEHLNAEIVLRTVT
DVTVALEWIRSTFLYIRALKNPTHYGFSSGLDKIGIEAKLQELCLKNLNDLSSFDLIRMD
EANNFKPTETGRLMAWYYIAFDTVKQFFTIKGTETLKELITMISNCTEFLDVKLRTNEKK
ILNTLNKDKDKITIRFPMEGKIKTREMKINCLIQAQLGCIPIQDFTLTQDTGRIFRNGLR
VTRWLSDFLASCKNNFSALLNSLILAKCFRCKLWENSLHVSKQLEKIGVSLSNAMVNAGL
TSFQKIEDTNPRELELILNRHPPFGNQIKESVLHLPKYELDIEQLPKYSDTLAEILVTIK
LTNYEQLLTKRTATDFHYVTLVIGDADNQVIFNQKIMDSVLLKTGNWMKKIEVKRAHKSE
DISINLISSDYVGFDIQQVYTAFYLTPKTAGSKEVRNQKLKAESSLDVCCGSPQSLSAAK
VDTGGRSKQEIIYKKYGNRECSHRCKNKDACGHDCCKTGVPPKSEMNGDSKVSLYLADLR
SRNSISSVPPVKRLKMQMLNQAPNVDLKQFGFTPKPSLPALPRSSNKQLSSSPSVDQVDN
VNSLGVSQKQLQSWNYGKSSALNVDFELRDDVWDDIDDEKLVFASNFANRELDEREPLCQ
YPSGKATNDISIDLCTLQDETNIQNSVVSVINSTSKVNLSVQSGNADMFSFQEKTHSNLS
QELKTVQCSSISKIISDSSKFTRKDDFFIFTKEHEKEVDPRYLLDDEISDVKPFLGIFDG
LL
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgttcaactcggcagacatggtcttttcattggataatttattttatgaaagaccagat
acaagacaaaggtatccagaaaataaagagcccaagatttgctggcttgcacctgctcca
gctattgctgaaattccagctgcagaggagttacagagggaactggaaaaaaacgcagcc
agcactcatatgggagggagaaagcaccataagtttatacaaccatgtaagagtaacact
gaggaagtaaatgataattcaccaggccctgttcatttcggaatagcttctgaaaaagaa
gtgctccagttaagcgcaggagaaagagagaatattagttttcctcatgaaagtctgaaa
atggtttcattgtttctcacttctgaccaagaaaaatctaaaacagaattaagggcttct
catcaacctggtgcaaatttttcacaaaataaactattaagtaattttccagaaaacagt
gatgatgagagtgcccattcaacattcagaaaaagcttatttaaagcatcttgttacaca
tacaaaaatacagaatttaaagatagttctgtggaggtcaaagaaattgatatttactta
aatacaagtgaaaacatgaaagaagtgagaaaagaaggtttatggagaaacaatcatcat
tctccaataactaaagactcagattttactcttcatagggtaaatgatggggacattgca
tttaaaaatggaattaaaatggaatcattttctaatgcttcagagattctggatataaca
ggaactacagtaagaaaattggaaaatttgagggctgttacagaaataccaacccaattt
agaagcatttttaaggagttcccgtattttaactatgcacagtctaaagctttggatgac
cttctttatacagacaggaattttgtgatttgtgctccaactggctctggaaaaactgta
atgtttgagctagctattaccagattactcatggaagcctcactgccttggataaatatt
aaagttgtttacatggcaccaataaaagctctatgcagtcagcgtttcgatgattggaaa
gaaaaatttggacctataggactcagctgcaaggagctgacaggagatacagtgatggat
gatttatttgaaatacatcatgctgatattattattactacacctgaaaaatgggatagc
atgactagaaggtggagggacaactctatagtccagcttgtacgactatttctcattgat
gaagtacatgttataaaggatgaaggccgtggtgcaacattagaagttgtagttagtcgg
atgaagactgttcagtcttctctttggcgtcttttagagaatcatgacactgttcctccc
ttgagatttgtagctgtttctgcaacaatcccaaatgctgaagatattgcagaatggctt
tcagatagtaagatgcctgctgtatgtctgaaaatagatgaggatcaacgaccagtgaag
ctgcgcaaaattgttcttggttttccttgcagtgataatcagacagaattcaaatttgac
ttaactcttaactacaagatagcgactattatacaaacatactcggaacaaaaaccagca
cttgtgttttgtgccacaagaaaaggagtacagcaggctgcttctgttcttgcaaaagat
gctaagtttctactgagtatagaacagaaacaaagactacagaggtctgcaaattcattg
aaagatgccaaactgagagatcttttaatgtatggtgtggcttatcatcatgcgggtatg
gaggtatctgacagaaaaataattgaaggagcttttactgtaggagacttaccagtactt
tttactactagcacccttgcaatgggagtcaatctacctgcacatctggtggttataaaa
tccacgatgcactatgttggaggagtgttccaagaatacagtgaaactgatattctgcaa
atgattgggagagcaggaaggcctcaatttgatactacagctacagcagttattatgact
cgttggagtacaagggagaagtatatacagatgttaaatggtgctgacataatagagagc
agcttgcacaggcatcttgttgagcacttaaatgcagaaatagtgctacgtactgtcaca
gatgttactgtggctttggaatggatacgatcaacattcttatacattagagccttaaaa
aatccaacgcattatggtttttcatctggcttggataaaattggaattgaagcaaaatta
caagaactgtgtttgaagaacttaaatgatttatcgtcttttgatttgatcaggatggat
gaagcaaataatttcaaaccaacagagactggaagattaatggcatggtattatattgca
tttgatacagtgaaacaatttttcacaattaagggaacagagactttaaaggaattgatc
accatgatctccaattgcacagaatttctggatgtcaagttaagaacaaatgaaaagaaa
atactgaacactttgaataaagacaaggacaaaataactatcaggtttccaatggagggg
aagataaaaacaagagaaatgaaaataaactgtcttattcaggctcagctaggatgcatt
cctattcaagactttactttgacacaagatactggcagaatatttagaaatggcttaaga
gttactagatggttatctgactttctggcatcatgtaagaacaacttttctgctttatta
aactctttgattttagcaaagtgtttcaggtgcaaactttgggaaaattcacttcacgtg
tctaaacaattggaaaaaattggtgtatcactgtcaaacgctatggtaaatgctgggctg
acatcatttcaaaaaatagaagacacaaatccaagggaacttgaattgattttaaacaga
catcctccttttggaaaccagataaaagaatctgttttgcaccttccaaaatatgaactt
gacattgaacagcttccaaaatacagtgatacattggctgaaatcttagtaaccatcaaa
ttaacaaactatgagcagctactgacaaagagaacagcgacagactttcactatgttaca
ttggtcataggagatgctgacaaccaagtcatttttaatcagaaaattatggattctgtt
ctgctgaaaactggaaattggatgaagaaaattgaagtgaaaagagctcacaaatcagag
gacattagtataaacttaatcagttctgattatgttggctttgatatacagcaagtatat
acagccttttacttaacaccaaaaacagcgggaagtaaagaggttagaaatcaaaaactg
aaagctgagtcttcacttgatgtgtgttgtggctcaccgcaaagtctgtcagcagcaaaa
gtagatacaggaggcagatctaaacaagagattatttacaagaaatatggaaacagagaa
tgcagccatcgctgtaaaaataaagatgcatgtggacatgactgctgtaaaactggagta
cctccaaagtctgaaatgaacggagattcaaaggtttctttgtacctagctgatttaagg
agcaggaactcaatttcatctgtacccccagtaaaacggttaaagatgcagatgttaaat
caagctccaaatgtggatctcaaacaatttggttttactcctaaaccttcattgccggca
ttgccaaggtctagcaataaacagttgtcttcatcaccttcagtggaccaggtagataat
gttaatagcttaggagtatctcagaaacaactgcaatcttggaattatggaaagagtagt
gcgttgaatgtggactttgaactgagagatgatgtttgggatgatattgatgatgagaaa
ttagtatttgctagcaactttgccaatagagaattagatgagcgtgaaccactttgccaa
tatccaagcggcaaagccacaaatgacatttcaatagacttatgcacattacaagatgag
accaatattcagaactcagtcgtttctgtgattaatagcacatcaaaagtgaatttatct
gtacagagtggaaatgcagatatgttcagttttcaagaaaaaacccactcaaatctttca
caagagctaaaaactgtacagtgttcttcgatctcaaaaataatctcagactcttctaaa
tttactaggaaagatgatttttttattttcacaaaggaacatgaaaaagaagtggatccc
agatatcttcttgatgatgaaatcagtgatgtcaagccctttcttggaatatttgatggc
cttttgtaa
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