Caloenas nicobarica (Nicobar pigeon): 136002510
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Entry
136002510 CDS
T11056
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cnic03041
]
136002510 (YTHDC2)
Enzymes [BR:
cnic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136002510 (YTHDC2)
Spliceosome [BR:
cnic03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
136002510 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
AAA_19
Ank_2
HA2_N
ATPase
nSTAND3
AAA_22
PhoH
AAA_7
AAA_16
UvrD-helicase
ABC_tran
SRP54
AAA_29
AAA_30
ResIII
PBP-Tp47_a
AAA_23
Motif
Other DBs
NCBI-GeneID:
136002510
NCBI-ProteinID:
XP_065513687
LinkDB
All DBs
Position
Z:complement(36782295..36823571)
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AA seq
1430 aa
AA seq
DB search
MSRPSSVFSPQPGAGSSAPAASAGPAAAGRGRGKGLRDIRVDEEVEIAVNLALDRFRGGE
EKEMEFPSSFTSTERAFVHRLCQSLGLISKSKGKGANRYLTVRKKDGSELTRAVMICCLA
PSIKHAIRSFIQRFPVTNKERTELLPKTERGNTCAVESENKEVKKTSGRLNNGIPQVPVK
RGESEFDSFRQSLPVFEKQEEIVKTIKENKVVLIVGETGSGKTTQIPQFLLDDCSKTGTP
CRMFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGILLRTL
MAGDSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQKQTNLKLIISSAALDADLFIRYF
GSCPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQREEKQQSTLTEWCSAQEN
SSKLESQRQRSVPSAIEEYNLLDDGGDTVFSQPTEKDVNCLEPWLIKEMDSCLSDIWLHK
DVDSFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGASIHLKSSNG
WMALDWAKCFGQTEVVDLLESYSASVEFGNLDESSLVQSTGSDLSAEDRELLKAYHHSFD
SEKVDLDLIMHLLYNICHSYDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFM
LHSNMQTLDQKKVLKSPPPGIRKIILSTNIAETSITVNDVVFVIDSGKMKEMSFDALSCV
TMLKMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQTPELLRMPLQELCLHT
KLLAPVNCPIVDFLMKAPDPPPALIVRNAVQMLKTIDAMDPWEDLTELGYHLTELPVEPH
LGKMVLCAVILKCLDPILTIACTLAYRDPFVLPTLASQKRAAMLCRKRFTAGTFSDHMAL
LRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGADIRD
VNTNSENWAVVKAALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPTSVLSQPQYKKIPPA
NGQAAAIQALPTDWVIYDEMTRAHRIANIRCCSVVTPVTVSLFCGPARLPSNALQEPSSF
REDAVPGDNSDSEVEDKATTNLAVLKLDEWLHLRLEPEAAGLLLQLRQKWHSLFLRHMRA
PSKPWSQADETTVRAITAVLSTEEQSAGLQQPSGIGQRPRPMTSEELPLASTWRSTNSRK
SSAETEFSDDSSNAEKVLMKSTPPVLHQPKKHKEKKILHSKRTSDDRSDQSSVKSTDSSS
YPSPCTSPSSPISGKGSKSPSPRPNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSNERKL
NRAFWESGMVYLIFSVQGSGHFQGFARMASEIGCEKSQDWGCAVFGGVFKVEWIRKESIP
FQFAHHLLNPWNDNKKVQISRDSQELEPQVGEQLLQLWDRIPVAGKNSTD
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcccagcagcgtcttctcgccgcagcccggcgcgggctccagtgcccccgcc
gcctccgccggcccggcggcggcgggccgcggccgaggcaaggggctgagggatatccgc
gtcgacgaggaggtggagatcgcggtgaaccttgccctggaccggttccgtggcggagag
gagaaagaaatggaatttccctcttctttcactagtactgaaagagcatttgttcatcgg
ctctgtcagtctcttggactcatatctaaaagtaaagggaaaggagcaaatcgatacctg
actgtaaggaagaaggatggctcagaactaacacgtgcagtaatgatttgttgcttggct
cccagtataaaacatgctattcggagtttcattcaaagatttcctgtcacaaataaagaa
cgaacagaacttctgccaaagacagagcgaggaaacacgtgtgctgtcgaatctgaaaac
aaagaagtgaagaagacaagcggacgacttaacaacggtatcccccaggttccagtgaaa
agaggggaatcagaatttgattccttcaggcaatcactgccagtttttgaaaaacaggaa
gaaattgtcaaaacaataaaggagaataaagtcgttctgattgtaggagagactggatca
ggaaaaactactcaaatccctcagttccttcttgatgactgttccaaaactggaactccc
tgtcggatgttttgcactcagccaagacgtttggcagctattgctgtggctgaaagagtg
gcagcagaaagaagagaaaagattggccagacaattggttatcagatccgattagaaagc
agggtttctccaaagacactgttaacgttttgcactaatggcatactgcttcgcacactg
atggccggagacagcactttatcaacagtgacacatgttattgtggatgaagtacatgaa
agggacaggttcagtgacttcttgttaataaaactgagagatgtgttgcaaaaacagact
aacttgaaactaattatttctagtgctgctctggatgccgatctctttattaggtatttt
ggaagttgcccagtaatacacatacaaggaagaccttttgaagttaaggagatgtttttg
gaggacattttgcgaagcactggctatacaaacaaagagatggtaaagtacaaaaaagag
aaacagcgagaagaaaaacagcaaagcactcttactgagtggtgttctgctcaagaaaat
agtagcaaactggaatctcagagacaaagatctgtcccaagtgcaattgaagagtataat
ctgttggatgatggtggtgacacagtatttagtcaaccgactgaaaaagatgttaattgc
ctcgaaccatggctaataaaagaaatggattcttgtctttctgacatctggttgcataaa
gatgttgattcctttgctcaggtgttccatcttattttaactgaaaatgtcagtgttgat
tatagacatagcgaaaccagtgcaactgcactaatgatcgcttcagggagaggttttctg
agtcaagtagaacaactgatcagtatgggagcaagtatccacttgaaatcatccaatggc
tggatggctttggactgggctaagtgcttcggacagacagaggttgtcgacctgttggag
tcctacagtgcttcagtggaatttggaaatctggatgaaagttccttggtccaaagtact
ggtagtgaccttagtgcagaggacagagaactcttgaaagcttatcatcacagttttgat
agtgaaaaagtggatctggacctgattatgcacttactttataacatctgccatagttat
gatgctggagcaattttaatatttcttcctggatatgatgagatagttagcctgagggac
cgtattctttttgatgacaagagatttgctgataatgctcacagataccaggttttcatg
cttcattcaaatatgcagactttggaccagaagaaggtgcttaaaagtccaccgcctggc
atccgcaaaataattctttctactaatattgcagaaaccagcataacagtcaatgatgtt
gtatttgttattgactcaggcaagatgaaagagatgtcttttgatgcactgagttgtgtt
acaatgctaaaaatggtgtggatatcaaaagccagtgctatccagagaaaaggcagggct
gggcgctgtcagcctggagtctgttttcgtctcttcagtaggctccgatttcagaatatg
ctggaatttcagactccagaacttctaagaatgccacttcaggagctttgtttacacaca
aaacttctggctccagttaattgtccaattgtcgacttccttatgaaagctcctgatccg
ccaccagctttaatagtgagaaatgctgtgcaaatgcttaagacaatagatgccatggat
ccttgggaagacctcactgaacttggttatcatctcactgaattaccagtagaaccacac
cttggtaaaatggtgttgtgtgctgttattttgaagtgcctggatcctattcttaccatt
gcttgcactcttgcgtatcgagacccttttgtcctacctacactggcctctcaaaagcgt
gcagccatgctgtgtagaaaacgtttcactgcaggaacatttagtgaccatatggcgctt
ctcagggctttccaggcatggcagaaggcacgcagtgatggctgggagagagccttctgt
gaaaagaactttctatctcaagccacgatggaaatcatcataggaatgagaacacaattg
cttggccagcttagagcctcaggttttgttagagccagaggaggagctgatattagagat
gttaatactaactctgagaactgggctgtagttaaagctgctttagtggctgggatgtat
cccaatctcgtgcatgtagacagagaaaacctggttttgactggaccaaaggagaagaaa
gtgcgatttcatcctacctctgttcttagtcagcctcaatataaaaagattcccccagca
aatgggcaagctgcagccattcaggctctccctacagattgggttatatatgatgaaatg
acgagagctcacaggatagcaaatatcagatgctgttctgttgtaacacctgtcactgtg
tcactgttctgtggaccggctagattgccaagtaatgctttgcaggaaccttcatccttt
cgagaggatgcggtacctggtgataacagtgatagtgaggtggaggacaaagctaccacg
aatttggcagtactgaagctagatgaatggctccatctgaggctggaacctgaagctgct
ggtttgctgttgcaactcaggcagaagtggcatagcttatttctgcgtcatatgcgagct
ccttctaaaccatggtctcaagctgatgaaacaactgtaagagcaattacagctgtttta
agtactgaagaacagtctgccggtttgcagcagccttcaggaattggtcagagaccaaga
cctatgacttctgaagaacttcctttagcatctacctggaggtcaaccaacagtagaaaa
agctcagcagaaactgaattctctgatgattcctctaatgctgaaaaagttttaatgaaa
tcaacgcctcctgtgcttcaccagccaaagaagcacaaagaaaaaaaaattttgcactcc
aaacgaacttcagatgacaggtcagatcaatcatcagtgaagtctacagacagcagtagc
taccctagtccctgcaccagtccttcttctccaatatctggaaagggttccaaatctcct
tcaccaagaccaaatatgccagttcggtacttcataatgaaaagcagcaacttgcaaaat
atcgatatttctcagcagaaaggtatatggtctactacgccaagtaatgaacgaaagcta
aatagagccttttgggagagtggcatggtttacttgatattttctgttcaagggtctgga
cactttcagggttttgctagaatggcttcagagatagggtgcgagaaaagtcaggactgg
ggatgtgctgtttttggaggtgtattcaaggtggagtggatccgaaaagaaagcattcct
tttcagtttgcacaccatttgctcaacccttggaatgacaataagaaagtacaaataagc
agagatagccaggagctggaaccacaagttggagagcagttgctacagctttgggaccgt
attcctgtggcaggaaaaaactcaactgattga
DBGET
integrated database retrieval system
