Chryseobacterium nakagawai: EG343_09405
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Entry
EG343_09405 CDS
T06300
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cnk
Chryseobacterium nakagawai
Pathway
cnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG343_09405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnk03019
]
EG343_09405
03400 DNA repair and recombination proteins [BR:
cnk03400
]
EG343_09405
Enzymes [BR:
cnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EG343_09405
Messenger RNA biogenesis [BR:
cnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG343_09405
DNA repair and recombination proteins [BR:
cnk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EG343_09405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
BrxL_ATPase
Glyco_hydro_17
DUF7022
Motif
Other DBs
NCBI-ProteinID:
AZA90829
UniProt:
A0AAD1DRF2
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All DBs
Position
2099942..2101849
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AA seq
635 aa
AA seq
DB search
MISPQDFQKLKYDTLKYFWGYTGFRDSQEEIINAVINEKDSLVLLPTGAGKSLCYQLPAL
LKEGTCLVISPLLALMKDQVNQLKFRGIEAEYLSSELDEYDAEAIYNRCKEGLTKLLYVS
PERLTNIQFLQNIEEIELSFIAVDEAHCISEWGQDFRPSYQNIKGFRMNNPETPCLALTA
TATPKVLEEIKNKLELRNPAVFQKSFKRNNIKIFTEEVSDKFQRVLDILKYNTDSGIVYV
RTRKEAELLSEFLKKNQLKNVDYFHAGLTTKEKNTRQNTWNNSDNQVLISTNAFGMGIDK
DNVRFVLHYSPAASIENYYQEIGRAGRDGKESFAFMLWNKQELLNFDQILKNQIPNKAEF
LKIISYLYSIFQVAEFELPEKTFQLNTTGIQNFTRLSKAKINNVLNFLHNQEIIYYNDNK
SLSSLELFIKSDEIDQLPQKDAYFIELLLRTVSGITTHKVMFSEQQVSNKIGVGIPLIKE
RLKELQQRNYLEYLDGALSSIKFLKPRDERAVNNAYWKLFEHIQRNKIQKWEEMKFYVED
KDYCKMKLILAYFGEKNSKNCGQCSVCEKNKQSIFGKNISQQIINLLAKKSATIEELSVQ
LSYHSKESILENLIFLLDSGKVKMLNFRTYALNHG
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgatttctccacaggattttcaaaagctaaaatatgatactcttaagtatttctggggc
tataccggcttcagagattctcaggaagaaattatcaatgctgttatcaatgaaaaagac
agtctggtacttcttcctacaggggccggtaagtcattatgttaccagctgcctgcttta
ttaaaagaaggaacctgtctggtgatctcccctttgctggctttaatgaaagaccaggtg
aatcagctaaaattccgtggtatagaagcagaatacctgtcatctgaattggatgaatat
gatgctgaagctatttacaatcgttgcaaagaaggtcttaccaagctgctttatgtatct
cctgaaagactaaccaatattcagtttcttcagaatatcgaagaaatagagctatcattc
attgctgttgatgaggcacactgtatttctgaatggggacaggatttccgtccaagctat
cagaatattaaaggtttcagaatgaataatccggaaactccatgcctggcacttactgca
actgcaactccaaaagttttggaagagatcaaaaataagcttgagctgagaaatccggct
gttttccagaaaagctttaaaagaaataatatcaaaatctttacagaagaggtttccgat
aaatttcagcgggttctggatattttaaaatacaatacagattcaggaattgtttacgta
agaaccagaaaagaagctgaactgctttcagagtttttaaagaaaaatcagctaaaaaat
gtagattattttcatgcaggcttaactacaaaggaaaagaatacaagacaaaacacctgg
aataatagtgataatcaggtcttaatttctaccaatgcctttgggatgggaattgacaag
gataatgttcgttttgtgctccactactcacctgctgcttcaattgaaaattattaccag
gaaataggaagagccggaagggatggtaaggagagttttgcgtttatgctttggaacaaa
caggagcttttgaactttgatcaaattctcaaaaaccagattcccaacaaggctgaattt
ttaaagatcatcagctacctctactctatttttcaggtagcagaatttgagttacccgag
aaaacattccaactgaatacaaccggaatacaaaactttaccaggttatcaaaagccaaa
atcaataatgtcctcaatttccttcataaccaggaaatcatttactacaatgacaataaa
agcctgtcatctttggagctttttattaaatctgatgaaatagatcagctgccacaaaaa
gatgcatatttcatagagcttttactccgcactgtgtccggaattacaacccataaagtg
atgttcagtgaacaacaggtaagtaataaaattggagtgggtattcctttaatcaaagaa
cgtctaaaggagcttcaacagagaaactatcttgaatatctggacggagctttatcgagt
atcaaatttctgaaacctcgtgatgagagagctgtcaataatgcttattggaaacttttt
gaacatattcaacgaaataagattcagaaatgggaagaaatgaaattctatgttgaagat
aaggattactgtaaaatgaaacttattctggcttatttcggggaaaaaaattcaaaaaac
tgcggccagtgttctgtttgtgaaaagaataaacagtctatttttggcaaaaacatttcc
cagcagatcattaatttactggcaaaaaaatcagcaaccatcgaagaactttctgtacag
ctaagttatcattccaaagaaagcatattggaaaacttaatttttctattagactccgga
aaggtaaaaatgttgaatttcagaacctatgcacttaatcatgggtaa
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