Chryseobacterium nakagawai: EG343_10815
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Entry
EG343_10815 CDS
T06300
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cnk
Chryseobacterium nakagawai
Pathway
cnk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cnk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EG343_10815 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnk03021
]
EG343_10815 (rpoC)
03400 DNA repair and recombination proteins [BR:
cnk03400
]
EG343_10815 (rpoC)
Enzymes [BR:
cnk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EG343_10815 (rpoC)
Transcription machinery [BR:
cnk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EG343_10815 (rpoC)
DNA repair and recombination proteins [BR:
cnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EG343_10815 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AZA91090
UniProt:
A0AAD0YL64
LinkDB
All DBs
Position
complement(2394442..2398707)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHIGLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFENMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTEDMKVK
GEGLAFYSPEEAEIAYAEGRVSLNAKVRCKLPVKENGEIVIRLIETSVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIATSIETVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKVDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
RISERILGRVSLHNIYDPESDELIASADQVIIEELAKKIEEAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKVIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNESKTPLMVANVPYGSILSVKP
GDKVKKGDMICRWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPDDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDAGDSKEFKPGQMITARELRDE
NSKLRREDQSLVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
VDALGGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttcaccg
gagtctattttacaagactcaagaggggaggttttaaagccggaaactattaactacaga
actcacaaaccagaaagagacgggctattctgtgagaaaatctttggtcctgtaaaggat
tacgaatgtgcttgtggtaaatacaagagaattcgttacaaagggatcgtttgcgaccgt
tgtggtgtagaagttaccgagaaaaaagtaagaagagaaagaatcggacacattggtttg
gttgttcctattgctcacatctggtacttccgttcattacctaataaaatcggatacctt
ttaggaattccttctaagaaattagacatgatcatctactacgaaagatatgtagtgatt
caacaaggtattgctaagaaattagacggttctgattttgaaaatatggagttcttaaca
gaagaagagtaccttgatatcatggaaactcttcctgtagaaaaccagtatcttgatgat
tctgatccaaacaaattcatcgctaaaatgggtgctgaagctgttgaggaattattaaaa
agaatcgatcttgatgcattatctttcgacttgagacataaagctcacaatgaaggttct
aagcaaagaagaactgaagctctgaaaagattgaacgttgtagaagcattaagaggtgct
aatacaagaatgatcaacagaccggagtggatgattatgcgtgtacttcctgttattcca
ccagaattaagaccattagttccattggatggaggacgttttgcaacttctgacttaaat
gacctttatagaagagttatcatcagaaataaccgtttaaagagattattggagatcaaa
gctcctgaagtaatcttgagaaacgagaagcgtatgcttcaggaatcagtagattcatta
tttgataatacaagaaaatcttctgcagtaaaatctgaatcaaacagaccattgaaatca
ctttctgattcattgaaaggtaagcaaggtcgtttccgtcagaacttactagggaaaagg
gttgactactctgcgcgttctgtaattgttgtaggtccaaacttacagcttcatgaatgt
ggtattcctaaagatatggcagctgagctttacaaaccgtttatcattagaaaactaatt
gagagagggattgtaaaaacagtaaaatctgcaaagagaattattgatagaaaagaacca
gtagtttatgatatccttgaaaacgtgatgaaaggtcaccctgttttattgaacagagca
cctactcttcacagactgggtattcaggctttccaacctaagatgatcgaaggtaaggca
atccaactacacccgttagtaacaacagcattcaacgccgatttcgatggtgaccagatg
gcggtacacttaccgttaggaccagaagcaatccttgaagctcagttattgatgttaggt
tctcaaaacattttgaaccctgcaaacggttctccaattacagtaccatctcaggacatg
gttcttggtctttatttcatgactaaagaattaagctctacagaagatatgaaagtaaaa
ggagagggtcttgcattctattctcctgaagaagcagaaattgcttatgcagaaggtaga
gtttcattaaatgctaaagtaagatgtaaactaccagttaaagaaaacggtgaaatcgtt
ataagattaatcgaaacttctgtaggtagaatcttatttaaccagattgtccctaaacaa
gtaggatatatcaatgaacttcttactaagaaatcattaagaaacgttatcggtaagatc
cttgcagatacggatttccctacaacagtgaaattcttggatgcaatgaaagacttaggg
tattcaaacgcattcaaaggaggtctttcgttctcacttggagatattgtagttcctgtt
gagaaaaagcagatgattgctacttcaattgaaacggtagacgaaattagagccaactat
aacatgggtctaattacagatacagaacgttataaccaggtaattgacgtttggacaaat
accaacgctggattaactgaaatgatcatgagcagaatgaaagttgaccaaggtggattc
aattctgtatacatgatgcttgactctggagcgaggggttctaaagaacagattcgtcag
ttatcagggatgagaggtttgatggcaaaaccgcaaaaagccggttctaccggagcggag
atcatcgaaaacccgatccttgctaactttaaggaaggtctttcgattctagagtacttt
atctctacccacggtgctcgtaagggtcttgcggataccgcacttaagacagccgatgct
ggttacctaacgagaagattagtagacgttgctcaggacgttatcgttacagaagacgac
tgtggaacactaagaggtacagaagttactgcacttaagaaaaatgatgagatcgttgaa
agaatctctgaaagaatcttaggtagagtatctcttcataatatttatgaccctgaatct
gatgaacttattgcaagtgcagaccaggtgatcatcgaagaattggcgaagaaaatcgaa
gaggctggattagaagctgttgaggttcgttcaccattaacttgtgaagctaagaaagga
atctgtgcaaaatgctacggtagaaacttagcaacaggtaaagtaatccacatgggtgaa
gcggtaggtgtaattgcagcacagtcaattggggaaccaggtactcagcttacgttgaga
actttccaccaagggggtactgcaggaaacgtatcagaaaacccatctattgttgcaaga
agagatggtatcgtagaaatggatgaagtaagaacaattacttctgaagatgaaaacggt
aatacagctgaggttgtagtttctcgttcaacagaattcagattagttgctgataatgag
tcaaaaactccattaatggtagctaacgtaccttacggatctatattatctgttaaacca
ggtgataaagtgaagaaaggtgatatgatctgtagatgggatccgtataacgcggttatc
attgctgaaacttcaggtaaggtagaatacgaggatattatccaaggtatttcattccaa
cttgaaattgatgaacaaacaggatttgaagagaaagtaatctctgaatcaagaaataag
aaagccgtacctaccttgaaggtggtagactctaaaggagttgagcaaaaagcatacaac
ttaccggtaggagcccacttgatggtaaacgatggtgaaaagattaaggctggtaaagtc
ttaattaagatcccaagaaaatctgcgaaagcgggggatatcaccggaggtcttccgaga
gttaccgaattattcgaagcaagaaacccttcaaacccagcggttgttactgaaattgac
ggggtagtttcttacggaaaaattaagagaggtaaccgtgaattgatcgttgaggctaaa
actggagaaagaaaaatttacttagttaaattatctaaccagatcttagtacaggagaat
gacttcgttagagctggttcgccactttctgatggttcaattactccagacgatatctta
agaattaaaggcccaacagctgttcaagaatacttagtaaatgagattcaggaagtttac
cgtctacaaggggtaaaaatcgacgacaagcacttcgaaatcatcgtaagacagatgatg
acaaaagtatctatcgtggatggaggtgatactcaattcctagaaggagctcttgagcac
aagtatgacttcttggaagaaaataacagagtattcggtcttaaagtagtcgttgatgct
ggtgattctaaagaattcaagccaggtcagatgattactgcaagagaattaagagacgag
aactctaagttgagacgtgaagatcaaagtttggtagaagtaagagaagctcttcctgct
acagcaactcctgtattacaaggtattacaagagcagctcttcagactaagtcattcatg
tctgcagcatcattccaggaaacaactaaagttcttaacgaggcagcagttgctggtaaa
gttgacgctcttggtggtcttaaagaaaatgtaattgtaggacacagaattcctgcaggt
acaggtcttaaagagtatcagaatgttatcgtaggttctaagaaagaattcgaagacctt
aactaa
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