Chionomys nivalis (European snow vole): 130862400
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Entry
130862400 CDS
T11437
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03013
Nucleocytoplasmic transport
cnl03015
mRNA surveillance pathway
cnl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130862400 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
130862400 (Ddx39b)
03015 mRNA surveillance pathway
130862400 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnl03019
]
130862400 (Ddx39b)
03041 Spliceosome [BR:
cnl03041
]
130862400 (Ddx39b)
Enzymes [BR:
cnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130862400 (Ddx39b)
Messenger RNA biogenesis [BR:
cnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130862400 (Ddx39b)
Spliceosome [BR:
cnl03041
]
Complex C
Other components
EJC/TREX
130862400 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130862400 (Ddx39b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130862400
NCBI-ProteinID:
XP_057607971
LinkDB
All DBs
Position
19
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgacgtcgacaacgagctcttagactacgaagatgatgaagtggagaca
gcggctgggggagatgggaccgaagcgcctgccaagaaagacgtcaagggctcctacgtc
tccatccacagctccggcttccgagacttcctgctcaagccagagctgctccgggccatt
gtagactgtggctttgagcatccatcagaagtccagcatgaatgcatccctcaggccatt
ctggggatggacgtcctgtgccaggccaagtcgggcatggggaagacagcagtgtttgtc
ctggccacactgcagcagctggagccaatcactgggcaggtgtctgtgctggtgatgtgt
cacactagggagctggcctttcagatcagcaaggagtatgagcgcttctcaaagtacatg
ccgaacgtcaaggtggcagtgttttttggcggtctatctatcaagaaggatgaagaggtg
ctgaagaagaactgcccacacattgtcgtggggactcccggccgaattctagccctggct
cgaaataagagcctgaacctcaagcacattaaacactttatcttggacgagtgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatctttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgccaccttgagcaaagagatccggccagtctgccgc
aagttcatgcaagatcctatggagatcttcgtggatgacgagaccaagttgacgctgcat
gggttgcagcaatactacgtgaaactgaaggacaatgagaagaaccggaagctttttgac
cttctcgatgtcctcgagttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgc
attgccctggcccagcttctagtggagcagaacttcccagccattgccatccaccgtggg
atgccccaggaggagaggctctctcggtatcagcagttcaaggatttccagcggcggatt
cttgtggctaccaacctgtttggccgaggcatggacattgaacgtgtgaacatcgccttc
aactatgacatgccagaggactcggacacctacctgcaccgggtggccagggcaggccgg
tttggcaccaagggcttggctatcacatttgtgtcagatgagaatgatgctaagatcctc
aatgacgtgcaggaccgctttgaggtcaacatcagtgagctacctgatgagatcgacatc
tcttcctatattgaacagacgcggtag
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integrated database retrieval system
